GO241690

Overview
NameGO241690
Unique NameGO241690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_MAGSA (50S ribosomal protein L5 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:   27 RLRLH*AAAVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 473
            RLR H    V    +  +  E   +NPM+  K+QK+V+N+ VGE+     ++  A   L  +SGQ PV +KA+ ++  F +R  + + C VT+R ++  + L+  +     +V+++  +  ++F   G +  G++E I    I YD    I GMD   V
Sbjct:    3 RLRKHYDTVV----KPALQKEFNYANPMQVPKLQKIVINMGVGEAAQDSKKIESALAELTLISGQKPVSTKAKMSIAQFKLREGQVVGCKVTLRAERMYEFLDRLINIALPRVRDFRGVPGKSFDGRGNYSLGLKEQIVFPEIDYDKVETIRGMDIIFV 157          
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_AQUAE (50S ribosomal protein L5 OS=Aquifex aeolicus GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  102 NPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 470
            +PM+  ++QK+V+N+ VGE+     +L RA + L  ++GQ PV ++AR +   F +R+   I C VT+R ++    L+  +     +VK+++ L  R+F   G + FGI E I    I YD    I GMD  +
Sbjct:   32 SPMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMPIGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYDKVDRIRGMDIII 164          
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_SYNFM (50S ribosomal protein L5 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 42/143 (29.37%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   75 RMASEKKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 473
            +++ + K  +PM+  ++ K++LN+ +G++      L  AA+ L  +SGQ PV ++AR ++ +F +R+   I C VT+RGD+  +  +  +     +V+++  +  R     G +  GI+EHI    I YD    I GM+  +V
Sbjct:   15 KLSEQFKYKSPMQIPRLSKIILNMGLGDAIQNIKILDSAAEELGMISGQKPVITRARQSIAAFKLRKGMPIGCMVTLRGDRMYEFFDKLVNVALPRVRDFRGVSSRALDGRGNYTLGIKEHIIFPEIDYDKIDKIKGMNITIV 157          
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_RHILW (50S ribosomal protein L5 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 48/147 (32.65%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   66 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHI-DLGIKYDPSTGIYGMDFFV 470
            ++ R A +++ S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R    I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI  L I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEQFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVREQMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFLEINYDKVDQMWGMDIIV 162          
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_HAHCH (50S ribosomal protein L5 OS=Hahella chejuensis (strain KCTC 2396) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   78 MASEKKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 470
            +  E   S+ M+  +++K+ LN+ VGE+ GD+  +  AA  LE ++GQ  V +KAR +V  F IR+   I C VT+RGD+  +  E  +     +V+++  L +++F   G +  G++E I    I YD    + GMD  +
Sbjct:   16 LMKEMSYSSVMQVPRIEKITLNMGVGEALGDKKQIEAAAADLEAITGQKVVVTKARKSVAGFKIRQGFPIGCKVTLRGDRMWEFFERLVDVAIPRVRDFRGLNQKSFDGRGNYSMGVKEQIIFPEIDYDKIDKVRGMDITI 156          
BLAST of GO241690 vs. ExPASy Swiss-Prot
Match: RL5_CLONN (50S ribosomal protein L5 OS=Clostridium novyi (strain NT) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  102 NPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 473
            N M+  K++K+V+N+ VGE+ D    L  A   L+Q++GQ PV ++A+ +V +F IR+N  I C VT+R D   +  +  +     +V+++  +  ++F   G +  GI+E I    I+YD    + GMD   V
Sbjct:   24 NIMQVPKLEKIVVNMGVGEAKDNSKVLESAIADLQQITGQKPVITRAKKSVANFKIRQNMPIGCKVTLRKDMMFEFADKLMNIALPRVRDFRGVSAKSFDGRGNYALGIKEQIIFPEIEYDKIDKVRGMDIIFV 157          
The following BLAST results are available for this feature:
BLAST of GO241690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RL5_MAGSA6.708e-1129.5650S ribosomal protein L5 OS=Magnetospirillum magne... [more]
RL5_AQUAE6.708e-1133.8350S ribosomal protein L5 OS=Aquifex aeolicus GN=rp... [more]
RL5_SYNFM8.761e-1129.3750S ribosomal protein L5 OS=Syntrophobacter fumaro... [more]
RL5_RHILW8.761e-1132.6550S ribosomal protein L5 OS=Rhizobium leguminosaru... [more]
RL5_HAHCH8.761e-1132.6250S ribosomal protein L5 OS=Hahella chejuensis (st... [more]
RL5_CLONN8.761e-1132.8450S ribosomal protein L5 OS=Clostridium novyi (str... [more]

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Properties
Property NameValue
Genbank description338 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 467 5, mRNA sequence.