GO241688

Overview
NameGO241688
Unique NameGO241688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   LSDWE +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLL 171          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            +FTPA+L +Y+G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   L+DW+ +F  KY  VG+++
Sbjct:   72 DFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLL 171          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   LSDW+ +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLL 171          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   LSDW+ +F  KY  VG+++
Sbjct:   71 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLL 170          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   L+DW+ +F  KY  VG+++
Sbjct:   71 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLL 170          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEBR (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=tag-131 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   94 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 381
            FTP QL  ++G+  SKP Y+AI GRV+DV   K +YGP  +Y  FAG+DA+RA       ++ +  S  GL+  E+  + DW   ++ +YP+VG V
Sbjct:  101 FTPEQLHFFDGSRDSKPCYLAILGRVYDVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFTENGLVASTHGLSHDELLSIRDWVSFYDKEYPLVGVV 196          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEEL (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=tag-131 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   94 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 381
            FTP QL  ++GT  SKPIY+AI GRV++V   K +YGP  +Y  FAG+DA+RA       +  +  +  GL+  E+  + DW   ++ +YP+VG V
Sbjct:  101 FTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVGVV 196          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTE---KEMGVLSDWEKKFEAKYPVVGRVV 384
            +F+  QL QY+G    + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L++    +M  + +WE +F+ KY  VGR++
Sbjct:   96 DFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTE---KEMGVLSDWEKKFEAKYPVVGRVV 384
            +F+  QL QY+G    + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L++    +M  + +WE +F+ KY  VGR++
Sbjct:   96 DFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTE---KEMGVLSDWEKKFEAKYPVVGRVV 384
            +F+  QL QY+G+   + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L++    +M  + +WE +F+ KY  VGR++
Sbjct:  102 DFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 201          
The following BLAST results are available for this feature:
BLAST of GO241688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGRC1_HUMAN1.544e-1644.55Membrane-associated progesterone receptor componen... [more]
PGRC1_RAT2.633e-1643.56Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE3.439e-1643.56Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN3.439e-1643.56Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG7.662e-1642.57Membrane-associated progesterone receptor componen... [more]
CB5D2_CAEBR6.487e-1541.67Cytochrome b5 domain-containing protein 2 homolog ... [more]
CB5D2_CAEEL8.472e-1541.67Cytochrome b5 domain-containing protein 2 homolog ... [more]
PGRC2_RAT1.106e-1441.58Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE1.106e-1441.58Membrane-associated progesterone receptor componen... [more]
PGRC2_HUMAN1.106e-1441.58Membrane-associated progesterone receptor componen... [more]

Pages

back to top
Properties
Property NameValue
Genbank description336 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 465 5, mRNA sequence.