GO241688

Overview
NameGO241688
Unique NameGO241688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   91 EFTPAQLIQYNGT-DPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTE---KEMGVLSDWEKKFEAKYPVVGRVV 384
            +FT  QL  Y+G  DP   I +A+ G+VFDVT    FYGP G Y +FAG+DASR LA    + + +    D L++    +   L DWE +F  KY  VG+++
Sbjct:   70 DFTLEQLRPYDGVRDPR--ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKLL 169          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   97 TPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            T  QL  YNG   SK +Y+AI G+VFDV  G+  YGP G Y  F GKDASRA       +  ++  +   +E ++  L DW   ++  Y  VG+++
Sbjct:   55 TKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKLI 150          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_RAT (Cytochrome b5 domain-containing protein 2 OS=Rattus norvegicus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   94 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y P   Y+ FAG+DASRA      ++  +   ++GL+  E+  L +W   +E  Y  VGR++
Sbjct:   38 FVPEELARYRGGPGDPGLYLALLGRVYDVSSGRKHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDVNGLSSSEILTLHNWLSFYEKNYVFVGRLI 134          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_MOUSE (Cytochrome b5 domain-containing protein 2 OS=Mus musculus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   94 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 384
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y P   Y+ FAG+DASRA      ++  +   ++GL+  E+  L +W   +E  Y  VGR+V
Sbjct:   38 FLPEELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLV 134          
BLAST of GO241688 vs. ExPASy Swiss-Prot
Match: CB5D2_HUMAN (Cytochrome b5 domain-containing protein 2 OS=Homo sapiens GN=CYB5D2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   94 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPRGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 381
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y P   Y+ FAG+DASRA      ++  +   +  L+  EM  L +W   +E  Y  VGRV
Sbjct:   38 FIPEELSRYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGSHYSGFAGRDASRAFVTGDCSEAGLVDDVSDLSAAEMLTLHNWLSFYEKNYVCVGRV 133          
The following BLAST results are available for this feature:
BLAST of GO241688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGRC1_CHICK6.071e-1341.18Membrane-associated progesterone receptor componen... [more]
CB5D2_DANRE1.036e-1238.54Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
CB5D2_RAT2.307e-1235.05Cytochrome b5 domain-containing protein 2 OS=Rattu... [more]
CB5D2_MOUSE2.307e-1236.08Cytochrome b5 domain-containing protein 2 OS=Mus m... [more]
CB5D2_HUMAN3.331e-1136.46Cytochrome b5 domain-containing protein 2 OS=Homo ... [more]

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Properties
Property NameValue
Genbank description336 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 465 5, mRNA sequence.