GO241677

Overview
NameGO241677
Unique NameGO241677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.236e-55
Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = 3
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.236e-55
Identity = 114/196 (58.16%), Postives = 142/196 (72.45%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+ +D LRE++S++V+ +K T  R F ET+ELQIGLKNYDPQKDKRFSGSV+LP +PRP+M+V   GD +H E+A  IG+D   VE                  YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKK
Sbjct:    1 MSKISNDVLRESVSALVEGAK-TKPRKFQETVELQIGLKNYDPQKDKRFSGSVRLPFVPRPRMRV-RAGDVKHCEQAGAIGVDAKGVEDLKKLNKNKKLVKKLAQAYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPI--NKNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKK 192          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 103/197 (52.28%), Postives = 142/197 (72.08%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXX-YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+ SD +R  +S + + ++E+ KR F ET+ELQI LKNYD +KDKRFSG +K+  + +PK+ VC+  D QH +EA KIG ++MD+E                   Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK
Sbjct:    1 MSKISSDQVRSIVSQLFKEAQES-KRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKPKLSVCVFADQQHCDEATKIGAEFMDIEALKKIGPKNKKAIKKLSKKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.027e-48
Identity = 101/196 (51.53%), Postives = 132/196 (67.35%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+    L EAI ++++  KE   R F E+I+LQ+ LKNYDPQKDKRFSGSV+LPH+ RP+M VC+L D  H + A+K  +  M+ E                  Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKK
Sbjct:    1 MSKIPPALLSEAIQNVLKDRKE---RKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKK 193          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 87/164 (53.05%), Postives = 113/164 (68.90%), Query Frame = 3
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 557
            SK+  D L EA+  ++ +  + N   F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 3
Query:   90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 578
            R+ +++I+   KE  +R F ET EL + LKNYDP KDKR  G+ KLP++ +   KVC+LGDAQ  E A+K  + +MDV+                  Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:    6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  210 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 545
            SGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK
Sbjct:    1 SGSIRLKHIPRPSMKVCVFGDQHHLDEAAAGNIPAMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 50/189 (26.46%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            ++ + ++ +       RNFT+T+E+ + LK+ D +K + RF   V LPH    + K+ ++ D    E A+K+GLD +  E                  Y  F+A+  ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   +G   M+++++ +N +  +N +++ L++
Sbjct:    6 QKLVEAVKEAKARAKPRNFTQTVEMAVNLKDVDLRKPENRFKLEVVLPHGRGKEPKIAVIADGAVAEAAKKLGLDVISGEELEELAKSPRQARKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLER 194          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_PYRAB (50S ribosomal protein L1P OS=Pyrococcus abyssi GN=rpl1p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 56/199 (28.14%), Postives = 97/199 (48.74%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++
Sbjct:    1 MSRMPFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLER 197          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_PYRHO (50S ribosomal protein L1P OS=Pyrococcus horikoshii GN=rpl1p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     ++E  V + K TV+ QLK    +   VG   M ++Q+ +N++  +N ++  L++
Sbjct:    1 MSRMAFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLER 197          
The following BLAST results are available for this feature:
BLAST of GO241677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RL10A_MACFA2.236e-5552.8260S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_CHLRE2.236e-5558.1660S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_DICDI4.982e-5552.2860S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_TRYBR2.027e-4851.5360S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG3.029e-4453.0560S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_ENTHI2.406e-3345.4060S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL10A_CAERE5.192e-2854.4660S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL1_PYRKO3.859e-1526.4650S ribosomal protein L1P OS=Pyrococcus kodakaraen... [more]
RL1_PYRAB2.501e-1428.1450S ribosomal protein L1P OS=Pyrococcus abyssi GN=... [more]
RL1_PYRHO7.278e-1427.6450S ribosomal protein L1P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank description325 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 454 5, mRNA sequence.