GO241677

Overview
NameGO241677
Unique NameGO241677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A K+GLD +                     Y  F+A   ++ +I R LG  L    K P +V      L   V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++
Sbjct:    5 RQKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLER 194          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 3
Query:   99 ISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLK 647
            I ++ +  ++  +R FTE++++ I LKN D  + K R   ++ LPH     +K+ +LG    V +A + G++  M  E                  +  FLA   V+  + R LGP L   G+ P  +     +   V   + +VK + K  +   + VG  +M E++I +N+   +  ++S L+
Sbjct:    8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVELIMGPEEIERLGGAPREARKIASEHQFFLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLE 192          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 51/189 (26.98%), Postives = 84/189 (44.44%), Query Frame = 3
Query:   90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            REA+   V+ ++E  K RNFT++ E    LK  D +K + R    V LPH    + K+ ++G     ++AE++GL  +  E                  +  F+A   ++  I R +G  L   GK P  V    +++  V   K TV    +      V VGN  M ++QI  N++  +N +    +K
Sbjct:    3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEK 191          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 47/188 (25.00%), Postives = 89/188 (47.34%), Query Frame = 3
Query:   93 EAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            EA+++ ++   +  KR F+E+I++ I LKN D  + K R   ++ LP+    K  +C++G    V +A+   +D  +  +                  Y  FLA  +V+ Q+ R LGP L   G+ P  +  Q  +   V   + +VK + K        VG+ +M  +Q+ +N+   +  + S+L++
Sbjct:    9 EAVTTAIE---KAPKRKFSESIDITINLKNIDMAQPKNRIDETILLPNGTGEKTGICVIGRGDIVTQAKDAKVDLILGPDEVERLGGAPREARRVASSYKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQ 193          
The following BLAST results are available for this feature:
BLAST of GO241677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RL1_PYRFU3.612e-1327.8950S ribosomal protein L1P OS=Pyrococcus furiosus G... [more]
RL1_METHJ8.897e-1224.8650S ribosomal protein L1P OS=Methanospirillum hung... [more]
RL1_METJA1.982e-1126.9850S ribosomal protein L1P OS=Methanocaldococcus ja... [more]
RL1_METB61.982e-1125.0050S ribosomal protein L1P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank description325 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 454 5, mRNA sequence.