GO241630

Overview
NameGO241630
Unique NameGO241630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.442e-33
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++ +  VKG++ F    NG T V G ++GL+PGLHGFH+HALGD TNGC STGPHFNP  K HGAP D  RHAGDLGNI+ G DG A  +I D  IPL+G +SI G  +++
Sbjct:    7 VLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.442e-33
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++ +  V G++ F Q     T V G I+GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGNI  G DG A  +I D+ IPLTG  SI G  +++
Sbjct:    7 VLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++S +  V G++ F Q  +  T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGNI  G DG A  ++ D+ IPL G  SI G  +++
Sbjct:    7 VLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.002e-32
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G ++V+G +   Q  +G T V  +I+GL PG HGFH+H  GDTTNGC STGPHFNP KK HGAP D  RHAGDLGNIVA  DGVAE +I D  IPLTG +S+ G  L++
Sbjct:   76 VLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVV 187          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.708e-32
Identity = 64/112 (57.14%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++ +  V G+  F Q     T V G I+GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGNI  G DG A  +I D+ IPLTG  SI G  +++
Sbjct:    7 VLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++  +  V G++ F Q  NG T V G + GLKPGLHGFH+HALGDTTNGC STG HFNP   +HGAP D  RHAGDLGN+  G DG    SI D  IPLTG +SI G  +++
Sbjct:    7 VLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G ++V+G +   Q   G T V  +ITGL PGLHGFH+H  GDTTNGC STGPHFNP K  HGAP D  RHAGDLGNIVA  +GVAE +I D  IPLTG +S+ G  L++
Sbjct:   56 VLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVV 167          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++ +  VKG++ F Q   G T V G ++GLKPGLHGFH+HALGDTTNG  STGPHFNP  K HGAP D  RHAGDLGNI+ G DG A  +I D  IPL+G +SI G  +++
Sbjct:    7 VLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G   V+G +HF Q  NG   VKG+ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ AG DGVA VSI D +I L+G +SI G  +++
Sbjct:    8 VLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVV 119          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G ++V+G +   Q  +G T V  +ITGL PGLHGFH+H  GDTTNGC STG HFNP K  HGAP D  RHAGDLGNIVA  DGVAEV++ D  IPLTG +S+ G  L++
Sbjct:   71 VLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVV 182          
The following BLAST results are available for this feature:
BLAST of GO241630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
SODC_BRAOC3.442e-3356.25Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC2_SOLLC3.442e-3357.14Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_NICPL4.496e-3355.36Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODCP_SPIOL1.002e-3258.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODC1_SOLLC1.708e-3257.14Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_SOYBN2.231e-3256.25Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODCP_PEA2.231e-3258.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODC2_BRAJU2.231e-3257.14Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_CAVPO6.492e-3256.25Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODCP_SOLLC6.492e-3258.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]

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Properties
Property NameValue
Genbank description278 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 400 5, mRNA sequence.