GO241621

Overview
NameGO241621
Unique NameGO241621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_HUMAN (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.527e-52
Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GI  G+DF
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGI-YGLDF 130          

HSP 2 Score: 31.187 bits (69), Expect = 1.527e-52
Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            YG  F     RPG          +  +G   R++KE+AM+WFQ K
Sbjct:  126 YGLDFYVVLGRPGFSIADKK-RRTGCIGAKHRISKEEAMRWFQQK 169          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_CHILA (60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 1.527e-52
Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GI  G+DF
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGI-YGLDF 130          

HSP 2 Score: 31.187 bits (69), Expect = 1.527e-52
Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            YG  F     RPG          +  +G   R++KE+AM+WFQ K
Sbjct:  126 YGLDFYVVLGRPGFSIADKK-RRTGCIGAKHRISKEEAMRWFQQK 169          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_BOVIN (60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 1.527e-52
Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GI  G+DF
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGI-YGLDF 130          

HSP 2 Score: 31.187 bits (69), Expect = 1.527e-52
Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            YG  F     RPG          +  +G   R++KE+AM+WFQ K
Sbjct:  126 YGLDFYVVLGRPGFSIADKK-RRTGCIGAKHRISKEEAMRWFQQK 169          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.594e-52
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 2
Query:   77 TRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GI  G+DF
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGI-YGLDF 135          

HSP 2 Score: 35.8094 bits (81), Expect = 2.594e-52
Identity = 21/45 (46.67%), Postives = 23/45 (51.11%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            YG  F     RPG    +     S  VG   R+TKEDAMKWFQ K
Sbjct:  131 YGLDFYVVLGRPGYNV-NHRKRKSGTVGFQHRLTKEDAMKWFQQK 174          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.404e-52
Identity = 101/127 (79.53%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   92 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            EKK  N MRE+K+QKL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GI  GMDF
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGI-YGMDF 137          

HSP 2 Score: 26.1794 bits (56), Expect = 4.404e-52
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  529 ASXXVGIXXRVTKEDAMKWFQVK 597
            A   +G   RV KE+ +KWFQ K
Sbjct:  154 APGRIGPSHRVDKEETIKWFQQK 176          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.066e-52
Identity = 102/126 (80.95%), Postives = 113/126 (89.68%), Query Frame = 2
Query:   95 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GI  GMDF
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI-YGMDF 127          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_ASHGO (60S ribosomal protein L11 OS=Ashbya gossypii GN=RPL11 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.794e-51
Identity = 99/125 (79.20%), Postives = 112/125 (89.60%), Query Frame = 2
Query:   98 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            K  NPMRE+K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VT+RG K+ ++LE GLKVKEY+L  +NFS+TG FGFGIQEHIDLGIKYDPS GI  GMDF
Sbjct:    4 KAQNPMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVHSKARYTVRTFGIRRNEKIAVHVTIRGPKSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIKYDPSIGI-YGMDF 127          

HSP 2 Score: 23.483 bits (49), Expect = 4.794e-51
Identity = 14/43 (32.56%), Postives = 18/43 (41.86%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQ 591
            YG  F     RPG    S        VG   + +KED + WF+
Sbjct:  123 YGMDFYVVMGRPGGRV-SRRKRCRSTVGNSHKTSKEDTIAWFK 164          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11B_YEAST (60S ribosomal protein L11-B OS=Saccharomyces cerevisiae GN=RPL11B PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 2.352e-50
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 2
Query:   98 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            K  NPMR++K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI  GMDF
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGI-FGMDF 127          

HSP 2 Score: 24.2534 bits (51), Expect = 2.352e-50
Identity = 14/45 (31.11%), Postives = 19/45 (42.22%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            +G  F     RPG    +        VG   + TKED + WF+ K
Sbjct:  123 FGMDFYVVMNRPGARV-TRRKRCKGTVGNSHKTTKEDTVSWFKQK 166          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.352e-50
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 2
Query:   98 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDF 472
            K  NPMR++K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI  GMDF
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGI-FGMDF 127          

HSP 2 Score: 24.2534 bits (51), Expect = 2.352e-50
Identity = 14/45 (31.11%), Postives = 19/45 (42.22%), Query Frame = 1
Query:  463 YGFSFCGFWXRPGXPCXSPXVGASXXVGIXXRVTKEDAMKWFQVK 597
            +G  F     RPG    +        VG   + TKED + WF+ K
Sbjct:  123 FGMDFYVVMNRPGARV-TRRKRCKGTVGNSHKTTKEDTVSWFKQK 166          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL11_CANGA (60S ribosomal protein L11 OS=Candida glabrata GN=RPL11 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.153e-49
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 2
Query:   98 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI*XGMDFPFV 481
            K  N MRE+K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGIQEHIDLGIKYDPS GI  GMDF  V
Sbjct:    4 KTQNVMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIKYDPSIGI-FGMDFYIV 130          

HSP 2 Score: 20.7866 bits (42), Expect = 1.153e-49
Identity = 7/17 (41.18%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  541 VGIXXRVTKEDAMKWFQ 591
            VG   + +KED + WF+
Sbjct:  148 VGNSHKTSKEDTIAWFK 164          
The following BLAST results are available for this feature:
BLAST of GO241621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL11_HUMAN1.527e-5280.3360S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
RL11_CHILA1.527e-5280.3360S ribosomal protein L11 OS=Chinchilla lanigera G... [more]
RL11_BOVIN1.527e-5280.3360S ribosomal protein L11 OS=Bos taurus GN=RPL11 P... [more]
RL11_DROME2.594e-5273.4860S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_CAEEL4.404e-5279.5360S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_SCHPO6.066e-5280.9560S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_ASHGO4.794e-5179.2060S ribosomal protein L11 OS=Ashbya gossypii GN=RP... [more]
RL11B_YEAST2.352e-5080.0060S ribosomal protein L11-B OS=Saccharomyces cerev... [more]
RL11A_YEAST2.352e-5080.0060S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_CANGA1.153e-4979.6960S ribosomal protein L11 OS=Candida glabrata GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank description269 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 391 5, mRNA sequence.