GO241621

Overview
NameGO241621
Unique NameGO241621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI 454
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGI 123          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMDFPFV 481
            N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G  P  + A+ +VR F IR+   I   VT+R D A+  L   L VK+Y++   +F   G   FGI ++ D  G+KYDP  GI  GMD   V
Sbjct:    2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGI-FGMDVAIV 126          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   83 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMD 469
            M +E +  NPMR+++++K+ +NI VGE+G+RL +A ++L++L+G  PV++ A+ T+R FG+R+   I   VT+RG KA + L   L    + +   +F + G   FGI EH+ + G +YDP  GI  GMD
Sbjct:    1 MMAETQTVNPMRKLRLEKVTVNIGVGEAGERLQKAYQLLQELTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGI-FGMD 129          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  110 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMD 469
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG KA + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GI  GMD
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGI-YGMD 133          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  101 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMDFPFV 481
            +SNPMR  KV+K+V+++ VGESG  L  A  +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D  G++YDP+ GI  GMD   V
Sbjct:    1 MSNPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGI-FGMDITVV 127          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMDFPFV 481
            N MREI + K+V+NI VG +G+RL RAAKVLE L+   P F+ A+ TVR F IR+   I   VT+R D A+  L+     K+Y++   +F   G   FGI ++ D  G+KYDP  GI  GMD   V
Sbjct:    7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGI-FGMDIAIV 131          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  101 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMDFPFV 481
            +SN MR   V+K+++++ VGESG  L  A ++L  ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G+  GMD   V
Sbjct:    1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGV-FGMDVTVV 127          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  107 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMDFPFV 481
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI  GMD   V
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGI-FGMDVAIV 126          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 58/124 (46.77%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  110 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMD 469
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GI  GMD
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGI-YGMD 133          
BLAST of GO241621 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 58/124 (46.77%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  110 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGI*XGMD 469
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GI  GMD
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGI-YGMD 133          
The following BLAST results are available for this feature:
BLAST of GO241621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL5_NITMS8.544e-2245.3050S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_THEVO1.903e-2146.0350S ribosomal protein L5P OS=Thermoplasma volcaniu... [more]
RL5_SULTO1.903e-2140.0050S ribosomal protein L5P OS=Sulfolobus tokodaii G... [more]
RL5_METMP2.486e-2146.7750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METBU2.486e-2144.5350S ribosomal protein L5P OS=Methanococcoides burt... [more]
RL5_PICTO3.247e-2145.2450S ribosomal protein L5P OS=Picrophilus torridus ... [more]
RL5_METBF3.247e-2142.1950S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_THEAC5.538e-2143.6550S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_METVS7.233e-2146.7750S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METVA7.233e-2146.7750S ribosomal protein L5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank description269 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 391 5, mRNA sequence.