GO241618

Overview
NameGO241618
Unique NameGO241618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.990e-11
Identity = 20/68 (29.41%), Postives = 35/68 (51.47%), Query Frame = 2
Query:  284 KLSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFP 487
            K     + F  FD+ G    R +W+ YY    A+++++D+ D+ R   +K ELD LL+   + +   P
Sbjct:   57 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 124          

HSP 2 Score: 38.1206 bits (87), Expect = 9.990e-11
Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  151 LGLWQKEAKILFLGLDNAGKTTLLHMLK 234
            LGL +KE  +L LGLDN+GKTT+++ LK
Sbjct:   11 LGLKKKEVHVLCLGLDNSGKTTIINKLK 38          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.990e-11
Identity = 20/68 (29.41%), Postives = 35/68 (51.47%), Query Frame = 2
Query:  284 KLSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFP 487
            K     + F  FD+ G    R +W+ YY    A+++++D+ D+ R   +K ELD LL+   + +   P
Sbjct:   57 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 124          

HSP 2 Score: 38.1206 bits (87), Expect = 9.990e-11
Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  151 LGLWQKEAKILFLGLDNAGKTTLLHMLK 234
            LGL +KE  +L LGLDN+GKTT+++ LK
Sbjct:   11 LGLKKKEVHVLCLGLDNSGKTTIINKLK 38          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 47.3654 bits (111), Expect = 9.998e-11
Identity = 23/86 (26.74%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  302 IKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFPNFGQQKLISHMLHXKDELRYHLGL 559
            I F  +D+GG    R +W+ Y+     ++++VD+ D+ER  E++ EL  +L+++ L +     F  ++ + + ++   E+   LGL
Sbjct:   61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPA-EITDKLGL 145          

HSP 2 Score: 38.1206 bits (87), Expect = 9.998e-11
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  163 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEETEY 294
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E  EY
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 58          
The following BLAST results are available for this feature:
BLAST of GO241618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ARL6_PONAB9.990e-1129.41ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN9.990e-1129.41ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARF_DUGJA9.998e-1126.74ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]

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Properties
Property NameValue
Genbank description266 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 388 5, mRNA sequence.