GO241618

Overview
NameGO241618
Unique NameGO241618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 9.075e-13
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 2
Query:  302 IKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESL 469
            IKF+ +DLGG    R  W+ Y+    AV+Y+VD+ D +R   +K E  A+L ++ L
Sbjct:   61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDEL 116          

HSP 2 Score: 41.2022 bits (95), Expect = 9.075e-13
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  166 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEETEY 294
            KEA+IL LGLDNAGKTT+L+ L+   +V   PT     E  +Y
Sbjct:   16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY 58          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.528e-12
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  257 NQHNIPLRRKLSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVP 481
            N   I L R  S+       +D+GG +  R VW  Y    D +VY+VD+ DK+R  ES+R+ + +L +E + NVP
Sbjct:   48 NVEMIELERNFSL-----TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVP 117          

HSP 2 Score: 37.3502 bits (85), Expect = 1.528e-12
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  136 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT 264
            G L S     K+A++L LGLD+AGK+TLL+ LK  + +   PT
Sbjct:    2 GSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPT 44          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 53.1434 bits (126), Expect = 1.531e-12
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 2
Query:  287 LSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFPNFGQQK 505
            LS   +K   +DLGG    R  W+ YYA   AV+++VD+ DK+R + + +EL  +L +E L +     F  ++
Sbjct:   57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQ 129          

HSP 2 Score: 38.5058 bits (88), Expect = 1.531e-12
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  157 LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT 264
            LW   KE +IL LGLD AGKTT+L+ L+   +V  +PT
Sbjct:   12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPT 49          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.351e-12
Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 2
Query:  281 RKLSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESL 469
            R L +  ++F  +D+GG +  R  WK+Y+   +A++++VD+ D  R  E +  L  LL +E L
Sbjct:   53 RTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKL 115          

HSP 2 Score: 40.0466 bits (92), Expect = 3.351e-12
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1
Query:  139 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT 264
            IL    L ++E ++L LGLDNAGKTT+L  L +E + +  PT
Sbjct:    6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPT 47          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.354e-12
Identity = 24/81 (29.63%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  305 KFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFPNFGQQKLISHMLHXKDELRY 547
            K   +D+GG +  R  W++YY   DAV++++D+ D  R  + K EL  LL +E  A   F  F  ++ +   +  ++  +Y
Sbjct:   61 KLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKY 141          

HSP 2 Score: 38.891 bits (89), Expect = 3.354e-12
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1
Query:  139 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT 264
            +L  L   +KE +IL LGLDNAGKTT+L     E +    PT
Sbjct:    6 VLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPT 47          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.338e-12
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  287 LSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVP 481
            + +GK +   +DLGG +  + +W  YYA    V+Y++D+ D+ER AESK+  + +++ E+L  VP
Sbjct:   64 VDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVP 128          

HSP 2 Score: 30.4166 bits (67), Expect = 4.338e-12
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  157 LWQK-EAKILFLGLDNAGKTTLLHMLK 234
            ++QK E  IL LGLDNAGKTT L   K
Sbjct:   12 MFQKDEYCILILGLDNAGKTTFLEQSK 38          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.338e-12
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  287 LSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVP 481
            + +GK +   +DLGG +  + +W  YYA    V+Y++D+ D+ER AESK+  + +++ E+L  VP
Sbjct:   64 VDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVP 128          

HSP 2 Score: 30.4166 bits (67), Expect = 4.338e-12
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  157 LWQK-EAKILFLGLDNAGKTTLLHMLK 234
            ++QK E  IL LGLDNAGKTT L   K
Sbjct:   12 MFQKDEYCILILGLDNAGKTTFLEQSK 38          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 5.648e-12
Identity = 23/75 (30.67%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  302 IKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFPNFGQQKLISHMLH 526
            +    +D+GG    R +WK YY   +AV+++VD+ D+ER  E K E+D LL  + L       F  ++ +++ ++
Sbjct:   69 LSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMN 143          

HSP 2 Score: 40.0466 bits (92), Expect = 5.648e-12
Identity = 24/55 (43.64%), Postives = 32/55 (58.18%), Query Frame = 1
Query:  130 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEETEY 294
            F+  + SL   +KE +IL +GLD AGK+TLL+ LK   +V   PT     E  EY
Sbjct:   12 FFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEY 66          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 7.345e-12
Identity = 24/86 (27.91%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  302 IKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVPFPNFGQQKLISHMLHXKDELRYHLGL 559
            I F  +D+GG    R +W+ Y+     ++++VD+ D+ER  E++ EL  +LS++ L +     F  ++ + + ++   E+   LGL
Sbjct:   61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAA-EITDKLGL 145          

HSP 2 Score: 38.1206 bits (87), Expect = 7.345e-12
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  163 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEETEY 294
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E  EY
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 58          
BLAST of GO241618 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 9.498e-12
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 2
Query:  287 LSIGKIKFKAFDLGGHQIARRVWKDYYARLDAVVYLVDAYDKERFAESKRELDALLSDESLANVP 481
            + +GK +   +DLGG +  + +W  YYA    V+Y++D+ D+ER +ESK   + ++S E+L  VP
Sbjct:   64 VDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVP 128          

HSP 2 Score: 30.4166 bits (67), Expect = 9.498e-12
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  157 LWQK-EAKILFLGLDNAGKTTLLHMLK 234
            ++QK E  IL LGLDNAGKTT L   K
Sbjct:   12 MFQKDEYCILILGLDNAGKTTFLEQSK 38          
The following BLAST results are available for this feature:
BLAST of GO241618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ARF3_ARATH9.075e-1339.29ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARL14_HUMAN1.528e-1237.33ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL1_YEAST1.531e-1234.25ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARL_SCHPO3.351e-1233.33ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL2_DICDI3.354e-1229.63ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARFRP_PONAB4.338e-1236.92ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_HUMAN4.338e-1236.92ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
ARFJ_DICDI5.648e-1230.67ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF_CRYNE7.345e-1227.91ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARFRP_RAT9.498e-1236.92ADP-ribosylation factor-related protein 1 OS=Rattu... [more]

Pages

back to top
Properties
Property NameValue
Genbank description266 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 388 5, mRNA sequence.