GO241606

Overview
NameGO241606
Unique NameGO241606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A+   +PF+F        ++  E LGV   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  +++ +F  RF+EA++YY+A+F+S+D + + D  ER  +EQ  L++
Sbjct:  403 RVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEA------LEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVH--WLRHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSR 572          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A+   +PF+F        ++  E LGV   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  +++ +F  RF+EA++YY+A+F+S+D + + D  ER  +EQ  L++
Sbjct:  403 RVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEA------LEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVH--WLRHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSR 572          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A+   +PF+F        ++  E LGV   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  +++ +F  RF+EA++YY+A+F+S+D + + D  ER  +EQ  L++
Sbjct:  394 RVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEA------LEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVH--WLRHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSR 563          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A+   +PF+F        ++  E LGV   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  +++ +F  RF+EA++YY+A+F+S+D + + D  ER  +EQ  L++
Sbjct:  402 RVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEA------LEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVH--WLRHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSR 571          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.154e-29
Identity = 73/187 (39.04%), Postives = 108/187 (57.75%), Query Frame = 1
Query:    7 HIIDFQIGQGSQWITLIQAFAARPGGP------PHIRITGIDDSM-SAYARGGG---LGIVGKRLSKLAEQFRVPFDFHAA-NMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            H+IDF IG+G Q++ L++  + R  G       P ++IT + +++       GG   L  VG  LS+L ++  +   F+   ++   D+  E+LG  P E +AVN AF L+ VPDESV TEN RD LL  VK L P+VVTLVEQE N+NTA F  R  E+   Y A+ ES++  +   + +R  +E+
Sbjct:  369 HVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEE 555          

HSP 2 Score: 25.7942 bits (55), Expect = 2.154e-29
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  555 VVNIIACEGPERIER 599
            +VN +ACEG +RIER
Sbjct:  561 LVNAVACEGIDRIER 575          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.741e-29
Identity = 64/178 (35.96%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFA-ARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            +HIIDF I  G QW  LI   + +RPGG P +RITGI+     +    G+   G RL++  ++  VPF+++A       +Q+E+L ++ GE V VN  F   ++ DE+V   + RD +L L+++++P V        N N   F  RF EAL +Y+A+F+  D  LAR+ + R+  E+
Sbjct:  501 IHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEK 678          

HSP 2 Score: 30.4166 bits (67), Expect = 4.741e-29
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  552 DVVNIIACEGPERIER 599
            ++VN++ACEG ER+ER
Sbjct:  684 EIVNVVACEGTERVER 699          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 74/183 (40.44%), Postives = 110/183 (60.11%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP++R+TG+  SM        L   GKRLS  A +  +PF+F        ++ +E L V   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  +N  +F  RF+EA++YY+A+F+S+  +   + +ER  +EQ  L++
Sbjct:  556 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMET------LEATGKRLSDFANKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVH--WLQHSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDL-SNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSR 725          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.017e-28
Identity = 68/166 (40.96%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A R GGPP  R+TGI     A      L  VG +L++LAE   V F+   F A +++  D  +  L     EAVAVN  F LH +       E    ++L +VK++ P + T+VEQESN N   F  RF E+L+YY+ +F+S++
Sbjct:  322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGI--GPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 481          

HSP 2 Score: 34.2686 bits (77), Expect = 3.017e-28
Identity = 11/20 (55.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            + N++ACEGP+R+ERH+ L+
Sbjct:  500 ICNLVACEGPDRVERHETLS 519          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.018e-28
Identity = 67/166 (40.36%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A R GGPP  R+TGI     A      L  VG +L++LAE   V F+   F A +++  D  +  L     EAVAVN  F LH +   +   E    ++  +VK++ P + T+VEQESN N   F  RF E+L+YY+ +F+S++
Sbjct:  309 RVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGI--GPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLLGRTGGIE----KVFGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 468          

HSP 2 Score: 34.2686 bits (77), Expect = 3.018e-28
Identity = 11/20 (55.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            + N++ACEGP+R+ERH+ L+
Sbjct:  487 ICNLVACEGPDRVERHETLS 506          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.640e-28
Identity = 61/177 (34.46%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            +HIIDF I  G QW +LI   A R G    +RITGI+     +    G+   G+RL+K  ++F +PF+++A       ++LE+L ++ GE VAVN  F   ++ DE+V+  + RD +L L++++ P V        + N   F  RF E L +Y+++F+  D NL R+   R+  E+
Sbjct:  428 IHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYNAIAQKWESIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEK 604          

HSP 2 Score: 29.261 bits (64), Expect = 6.640e-28
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  552 DVVNIIACEGPERIER 599
            +++N++ACEG ER+ER
Sbjct:  610 EIMNVVACEGTERVER 625          
The following BLAST results are available for this feature:
BLAST of GO241606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SCR2_ORYSJ1.067e-2942.08Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI1.067e-2942.08Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSJ1.067e-2942.08Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR1_ORYSI1.067e-2942.08Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCL8_ARATH2.154e-2939.04Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
SCL14_ARATH4.741e-2935.96Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCR_PEA1.541e-2840.44Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
RGA_ARATH3.017e-2840.96DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
RGA1_BRACM3.018e-2840.36DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
SCL33_ARATH6.640e-2834.46Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank description254 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 376 5, mRNA sequence.