GO241606

Overview
NameGO241606
Unique NameGO241606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.666e-28
Identity = 67/166 (40.36%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A RPGGPP  R+TGI     A      L  VG +L+ LAE   V F+   F A  ++  D  +  L     E+VAVN  F LH +    +      D++L +V ++ P++ T+VEQESN N+  F  RF E+L+YY+ +F+S++
Sbjct:  270 RVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGI--GPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLE 429          

HSP 2 Score: 33.4982 bits (75), Expect = 6.666e-28
Identity = 10/20 (50.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            + N++AC+GP+R+ERH+ L+
Sbjct:  448 ICNVVACDGPDRVERHETLS 467          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.646e-28
Identity = 74/182 (40.66%), Postives = 111/182 (60.99%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            VHIID  I QG QW  L    A+RPGGPPH+R+TG+  SM A      L   GKRLS  A++  +PF+F        ++  E L V+  EAVAV+  ++ H + D + S  +     L L++RL+PKVVT+VEQ+  ++  +F  RF+EA++YY+A+F+S+  +   + +ER  +EQ  L+K
Sbjct:  401 VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEA------LQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVH--WLQHSLYDVTGSDAH----TLWLLQRLAPKVVTVVEQDL-SHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSK 569          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.128e-27
Identity = 67/166 (40.36%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A R GGPP  R+TGI     A      L  VG +L++LAE   V F+   F A +++  D  +  L     EAVAVN  F LH +   +   E    ++L +VK++ P + T+VEQES+ N   F  RF E+L+YY+ +F+S++
Sbjct:  315 RVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGI--GPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLE 474          

HSP 2 Score: 34.2686 bits (77), Expect = 1.128e-27
Identity = 11/20 (55.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            + N++ACEGP+R+ERH+ L+
Sbjct:  493 ICNLVACEGPDRVERHETLS 512          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.469e-27
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  LIQA A RP GPP  R+TGI     A      L  VG +L K AE   V F+   F A +++  D  +  L     E+V VN  F LH +    ++     +++L +VK++ P++VT+VEQE+N N   F  RF E+L+YY+ +F+S++
Sbjct:  311 RVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGI--GPPAPDNSDYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQL----LARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLE 470          

HSP 2 Score: 31.187 bits (69), Expect = 1.469e-27
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFL 611
            + N++ACEG +R+ERH+ L
Sbjct:  489 ICNVVACEGADRVERHETL 507          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.471e-27
Identity = 69/167 (41.32%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFH--AANMSGYDVQLENLGVQPG--EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A RPGGPP  R+TGI            L  VG +L++LAE+  + F+F    AN S  D++ E L ++P   E VAVN  F LH +    ++     ++++  +K + PK+VT+VEQE+N N   F  RF EAL+YY+ +F+S++
Sbjct:  271 RVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQP--DNTDALQQVGWKLAQLAERIGIEFEFRGFVAN-SLADLEPEMLDIRPPEIEVVAVNAVFELHPL----LARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLE 430          

HSP 2 Score: 30.0314 bits (66), Expect = 1.471e-27
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHD 605
            + N++ACEG +R+ERH+
Sbjct:  452 ICNVVACEGMDRVERHE 468          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27
Identity = 61/185 (32.97%), Postives = 104/185 (56.22%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID--VNLARDHKERINIEQHCLAK 549
            ++HI+DF +  G QW  L++A + RPGGPP +R+TGI+   + +     +   G+RL +  +QF VPF+F+        + L+ L + PGE   VN    L + PDE+VS ++ RD +L L + ++P +    E     N+  F  RF EAL +Y+++F+  D  ++   ++K R  +E+  L +
Sbjct:  332 KLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVR 516          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.246e-27
Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGY-DVQLENLGVQPG-EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            +VH+ID  +  G QW  LIQA A RP GPP  R+TGI  S++          VG +L +LA    V F+F +  ++   D++ E L ++PG E+VAVN  F LH +     S     D+ L  +K + P ++T+VEQE+N N   F  RF E+L+YY+++F+S++
Sbjct:  253 KVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGYSLTDIQE------VGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHPGSI----DKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLE 407          

HSP 2 Score: 31.5722 bits (70), Expect = 3.246e-27
Identity = 10/19 (52.63%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFL 611
            ++N++ACEG +R+ERH+ L
Sbjct:  425 ILNLVACEGEDRVERHETL 443          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.153e-27
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHA-ANMSGYDVQLENLGVQP-GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIE 531
            RVH+ID  + QG QW  L+QA A RPGGPP  R+TGI    +       L  +G +L++ A+   V F+F   A  S  D++ E    +P  E + VN  F LH +   S S E    +LL  VK + P +VT+VEQE+N N   F  RF EAL+YY+++F+S++ + +   ++R+  E
Sbjct:  285 RVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTE--NSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIE----KLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSE 457          

HSP 2 Score: 28.1054 bits (61), Expect = 7.153e-27
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            ++N++A EG +R+ERH+  A
Sbjct:  464 ILNVVAAEGSDRVERHETAA 483          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.442e-26
Identity = 73/183 (39.89%), Postives = 109/183 (59.56%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A++  +PF+F        ++  + L V   EAVAV+  ++ H + D + S  N     L L++RL+PKVVT+VEQ+  ++  +F  RF+EA++YY+A+F+S+      + +ER  +EQ  L++
Sbjct:  527 RVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGTSMEA------LEATGKRLSDFAQKLGLPFEFFPVADKVGNLDPQRLNVNKREAVAVH--WLQHSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDL-SHAGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSR 696          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.471e-26
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQP--------GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH++DF I QG QW  L+QA A RPGGPP  R+TG+            L  VG +L++ A   RV F +    ++     LE   +QP         E +AVN  F LH +    ++     +++L  V+ + P++VT+VEQE+N N+  F  RF E+L+YY+ MF+S++
Sbjct:  346 RVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQP--DETDALQQVGWKLAQFAHTIRVDFQYRGL-VAATLADLEPFMLQPEGDDTDDEPEVIAVNSVFELHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 509          

HSP 2 Score: 31.5722 bits (70), Expect = 3.471e-26
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  513 GADQH*AALPSEGDVVNIIACEGPERIERHDFL 611
            G DQ  + +     + N++ACEG ER ERH+ L
Sbjct:  528 GTDQVMSEVYLGRQICNVVACEGAERTERHETL 560          
The following BLAST results are available for this feature:
BLAST of GO241606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GAI_ARATH6.666e-2840.36DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
SCR_ARATH7.646e-2840.66Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
RGA2_BRACM1.128e-2740.36DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
GAIP_CUCMA1.469e-2739.76DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
GAI_GOSHI1.471e-2741.32DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
SCL11_ARATH2.225e-2732.97Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
RGL1_ARATH3.246e-2738.79DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
RGL2_ARATH7.153e-2738.55DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
SCR_IPONI1.442e-2639.89Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
DWRF8_MAIZE3.471e-2636.84DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description254 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 376 5, mRNA sequence.