GO241606

Overview
NameGO241606
Unique NameGO241606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.471e-26
Identity = 65/172 (37.79%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQP-GEA--------VAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH++DF I QG QW  L+QA A RPGGPP  R+TG+            L  VG +L++ A   RV F +    ++     LE   +QP GEA        +AVN  F LH +    ++     +++L  V  + P++VT+VEQE+N N+ +F  RF E+L+YY+ MF+S++
Sbjct:  343 RVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQP--DETDALQQVGWKLAQFAHTIRVDFQYRGL-VAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRL----LAQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 507          

HSP 2 Score: 32.3426 bits (72), Expect = 3.471e-26
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 3
Query:  504 GS*GADQH*AALPSEGDVVNIIACEGPERIERHDFL 611
            G  G DQ  + +     + N++ACEG ER ERH+ L
Sbjct:  523 GGGGTDQVMSEVYLGRQICNVVACEGAERTERHETL 558          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.475e-26
Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFD---FHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A RP GPP  R+TGI     A      L  VG +L+KL E   V F+   F A +++  D  +  L     E+V VN  F LH +    ++     ++++ +VK++ P+++T+VEQE+N N   F  RF E+L+YY+ +F+S++
Sbjct:  318 RVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGI--GPPAPDNSDYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKL----LARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLE 477          

HSP 2 Score: 28.1054 bits (61), Expect = 3.475e-26
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFL 611
            + N++ACEG +R+E H+ L
Sbjct:  496 ICNVVACEGSDRVEWHETL 514          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.882e-26
Identity = 62/172 (36.05%), Postives = 96/172 (55.81%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQP---------GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH++DF I QG QW  L+QA A RPGGPP  R+TG+            L  VG +L++ A   RV F +    ++     LE   +QP          E +AVN  F +H +    ++     +++L  V+ + P++VT+VEQE+N N+ +F  RF E+L+YY+ MF+S++
Sbjct:  333 RVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQP--DETDALQQVGWKLAQFAHTIRVDFQYRGL-VAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 497          

HSP 2 Score: 31.5722 bits (70), Expect = 5.882e-26
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  513 GADQH*AALPSEGDVVNIIACEGPERIERHDFL 611
            G DQ  + +     + N++ACEG ER ERH+ L
Sbjct:  519 GTDQVMSEVYLGRQICNVVACEGTERTERHETL 551          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.655e-26
Identity = 62/172 (36.05%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQP---------GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH++DF I QG QW  L+QA A RPGGPP  R+TG+            L  VG +L++ A   RV F +    ++     LE   +QP          E +AVN  F +H +    ++     +++L  V+ + P++VT+VEQE+N N+  F  RF E+L+YY+ MF+S++
Sbjct:  337 RVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQP--DETDALQQVGWKLAQFAHTIRVDFQYRGL-VAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 501          

HSP 2 Score: 31.5722 bits (70), Expect = 7.655e-26
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  513 GADQH*AALPSEGDVVNIIACEGPERIERHDFL 611
            G DQ  + +     + N++ACEG ER ERH+ L
Sbjct:  524 GTDQVMSEVYLGRQICNVVACEGAERTERHETL 556          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.296e-25
Identity = 63/179 (35.20%), Postives = 103/179 (57.54%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHA-ANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENY-RDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            +HI+DF I  G QW   IQ+ + R   P  +RITGI+     +     +   G+RL++  ++F VPF++ A A+ +   +++E+L ++P E +AVN    L ++ DE+ S EN  RD +L L++ ++P V        + N   F  RF EA+ +Y+A+F+  D  L RD+KERI  E+
Sbjct:  362 LHIVDFGILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFER 540          

HSP 2 Score: 24.2534 bits (51), Expect = 1.296e-25
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  552 DVVNIIACEGPERIER 599
            + +N+IACE  +R+ER
Sbjct:  546 EAMNVIACEEADRVER 561          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.837e-25
Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            RVHIIDF I QG QW +  Q+ A+R   P H+RITGI +S         L   G RL   AE   + F+FH       DV+L  L V+ GE+VAVN    +H    +       RD  L L++  +P  + L EQE+  N+     R   +L YY+AMF++I  NLA D   R+ +E+
Sbjct:  385 RVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLE------LNETGDRLHGFAEAMNLQFEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAA-IRD-FLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEE 554          

HSP 2 Score: 26.9498 bits (58), Expect = 4.837e-25
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERH 602
            ++ NI+ACEG  R ERH
Sbjct:  560 EIRNIVACEGSHRQERH 576          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.224e-25
Identity = 64/178 (35.96%), Postives = 100/178 (56.18%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGY-DVQLENLGVQP-GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIE 531
            VH+ID  + QG QW  L+QA A RPGGPP  R+TG+ +  +      G+  +G +L++LA+   V F F+        D++ +    +   E + VN  F LH V  +  S E    +LL  VK + P +VT+VEQE+N N   F  RF EAL+YY+++F+S++  +    ++R+  E
Sbjct:  259 VHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGNPSNRE----GIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVFELHPVLSQPGSIE----KLLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDRVMSE 428          

HSP 2 Score: 29.6462 bits (65), Expect = 8.224e-25
Identity = 11/20 (55.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            ++N++A EG +RIERH+ LA
Sbjct:  435 ILNLVATEGSDRIERHETLA 454          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.698e-24
Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            +HIIDF I  G QW  LIQA + R  GPP +R+TGI+   S +     +   G+RL +  ++F VPF++     +  ++ L++L +  GE   VN    L + PDE+VS  + RD  L L + ++P +    E     N+  F  RF EAL + +++F+  +  L+ D   R  +E+  + +
Sbjct:  316 LHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIR 497          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.748e-24
Identity = 68/184 (36.96%), Postives = 96/184 (52.17%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPP-HIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            ++HI+DF I QG QW  L+QA A R  G P  IR++GI       +    L   G RL   A+   + FDF       + +   +  V P E +AVNF   L+ + DE   T    D  L L K L+P+VVTL E E + N   F  R   AL +Y+A+FES++ NL RD +ER+ +E+    +
Sbjct:  319 KIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDE---TPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGR 499          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.482e-23
Identity = 60/186 (32.26%), Postives = 98/186 (52.69%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            RVH+IDF I  G QW TLI  F+    G P +RITGI+     +     +   G+RL+  A+ F VPF++ A       +QLE+L +   E   VN  +   ++ DESV  E+ RD +L L+ +++P +          N   F  RF EAL +++++F+ ++  + R+ +ER+ +E     +  L
Sbjct:  451 RVHVIDFGILYGFQWPTLIHRFSMY--GSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREAL 634          

HSP 2 Score: 27.335 bits (59), Expect = 1.482e-23
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  552 DVVNIIACEGPERIER 599
            + +N+IACEG ER+ER
Sbjct:  632 EALNVIACEGWERVER 647          
The following BLAST results are available for this feature:
BLAST of GO241606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SLR1_ORYSJ3.471e-2637.79DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
GAIPB_CUCMA3.475e-2637.95DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SLN1_HORVU5.882e-2636.05DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT7.655e-2636.05DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
SCL34_ARATH1.296e-2535.20Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL28_ARATH4.837e-2538.20Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
RGL3_ARATH8.224e-2535.96DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
SCL30_ARATH6.698e-2432.42Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL4_ARATH8.748e-2436.96Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL9_ARATH1.482e-2332.26Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank description254 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 376 5, mRNA sequence.