GO241606

Overview
NameGO241606
Unique NameGO241606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPP-HIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            +HI+DF I QG QW  L+QA A R  G P  IRI+GI       + G  L   G RL   A    + F+F+        +   +  V P E + VNF   L+ + DE+ +T       L L + L+P++VTL E E + N   F  R   +L +Y+A+FES++ NL RD KER+ +E+
Sbjct:  274 IHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVG---TALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVER 448          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 62/196 (31.63%), Postives = 103/196 (52.55%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGP----PHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAA-----NMSGYDVQLENLGVQP--GEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            +HI+D  I QG QW  L+QA A R   P    P +RITG    ++      GL   G RL++ A+   + F FH       +++G  +Q+  L +    GE +AVN    LH + ++      +    L  +K L+ ++VT+ E+E+N    +F  RF EA+++Y A+F+S++  L  + +ER+ +EQ    K +L
Sbjct:  179 LHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVT------GLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGH---FLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEIL 365          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 65/179 (36.31%), Postives = 95/179 (53.07%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFH-AANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQE-SNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            VHIID  + QG QW  L    A+RP     IRITG   S         L   G+RL+  A    +PF+FH    + G  +    L  + GEAV V+  +M H + D  V+  N     L +++RL P ++T+VEQE S  +  +F  RF+EAL+YY+A+F+++   L  +  ER  +EQ
Sbjct:  152 VHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDL------LASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVH--WMQHRLYD--VTGNNL--ETLEILRRLKPNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQ 318          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.478e-19
Identity = 53/178 (29.78%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYD-VQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENY-RDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIE 531
            +HI+DF I  G QW   IQ  +    G   +RITGI+           +   G+RL++  ++F VPF+++A     ++ +++E   ++P E +AVN      ++ D     E+  RD  L L++ ++P V        + N   F  RF EAL +Y+A+F+     L++++ ERI+ E
Sbjct:  394 LHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFE 571          

HSP 2 Score: 28.4906 bits (62), Expect = 1.478e-19
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  552 DVVNIIACEGPERIER 599
            +V+N+IACEG +R+ER
Sbjct:  578 EVMNVIACEGVDRVER 593          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 58/182 (31.87%), Postives = 97/182 (53.30%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDV-QLENLGVQPGEAVAVNFAFMLHHVP---DESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            RVH+ID+ I +G QW +LIQ+ A+   GP H+RIT +  + +       +   G+RL+  A     PF FH   +   +  +   L +  GEA+  N    L H+     ESV++       L   K L+PK+VTLVE+E  +    F  RF+++L++Y+A+F+S++      ++ R  +E+
Sbjct:  239 RVHVIDYDIMEGVQWASLIQSLASNNNGP-HLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRAPESVAS------FLNGAKTLNPKLVTLVEEEVGSVIGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARTLVER 413          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 57/184 (30.98%), Postives = 93/184 (50.54%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGP--PHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESN-TNTAAFYPRFLEALNYYTAMFESIDVNL-----ARDHKERINI 528
            R+HI+D+ I +G QW +L+QA  +R  GP   H+RIT +  + +       +   G+RL+  A+    PF +    +        +L +  GEAV +N    + H+P  S  T +     L   K L+PK+VTLV +E        F  RF++ L+ ++A+F+S++  L     AR   ER+ I
Sbjct:  214 RIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIGQPFSYQHCKLDTNAFSTSSLKLVRGEAVVIN---CMLHLPRFSHQTPSSVISFLSEAKTLNPKLVTLVHEEVGLMGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARGFVERVFI 394          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 57/196 (29.08%), Postives = 98/196 (50.00%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITG-------IDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDF----HAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESN---TNTAAFYPRFL----EALNYYTAMFESIDVNLARDHKERINIEQ 534
            ++HI+D      +QW TL++A A R    PH+R+T        ++D  +++     +  +G R+ K A    VPF F    H  ++S +D  L  L V+P E +A+N    +H +     S  + RD ++   +RL P++VT+VE+E++        F   FL    E L ++   FES + +  R   ER+ +E+
Sbjct:  255 KIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRM---MKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFD--LNELDVKPDEVLAINCVGAMHGI----ASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLER 441          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 60/197 (30.46%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGP-PHIRITGIDDSMSAYARGGG-LGIVGKRLSKLAEQFRVPFDFHAANMSG--YDVQLENLGVQPG---EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESN------------TNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            R+HI+D      +QW TL++A A R     PH+ IT +  + +  A     +  +G+RL K A    VPF F A + SG   D+ L  L ++ G    A+AVN    L  V          RD  +  ++RL P+VVT+VE+E++               AAF   F E L +++A  +S++ +  +   ER+++E+
Sbjct:  317 RLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLER 506          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 59/197 (29.95%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGP-PHIRITGIDDSMSAYARGGG-LGIVGKRLSKLAEQFRVPFDFHAANMSG--YDVQLENLGVQPG---EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESN------------TNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQ 534
            R+HI+D      +QW TL++A A R     PH+ IT +  + +  A     +  +G+RL K A    VPF F A + +G   D+ L  L ++ G    A+AVN    L  V          RD  +  ++RL P+VVT+VE+E++               AAF   F E L +++A  +S++ +  +   ER+++E+
Sbjct:  317 RLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLER 506          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: MOC_ORYSJ (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica GN=MOC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 60/214 (28.04%), Postives = 87/214 (40.65%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPG---GPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDF--------------------HAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVP--DESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAA------FYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHI+D     G QW  L+QA A R     GPP +R+TG         R       G RL   A    +PF F                     AA  +        L   P E +AVN    LH++   DE  +        L  VK +SP VVT+ E+E+               R   A+++Y+A+FE+++  +    +ER+ +EQ  L +
Sbjct:  157 RVHILDLDAVHGVQWPPLLQAIAERADPALGPPEVRVTGAGADRDTLLR------TGNRLRAFARSIHLPFHFTPLLLSCATTAPHHVAGTSTGAAAAASTAAAATGLEFHPDETLAVNCVMFLHNLAGHDELAA-------FLKWVKAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGR 357          
The following BLAST results are available for this feature:
BLAST of GO241606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SCL7_ARATH2.155e-2236.52Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
SCL18_ARATH1.182e-2031.63Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
SCL23_ARATH7.664e-2036.31Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH1.478e-1929.78Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
NSP2_MEDTR1.888e-1831.87Nodulation-signaling pathway 2 protein OS=Medicago... [more]
SCL26_ARATH4.649e-1730.98Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SHR_ARATH1.496e-1529.08Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SHR2_ORYSJ2.388e-1330.46Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japoni... [more]
SHR2_ORYSI5.320e-1329.95Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica... [more]
MOC_ORYSJ3.448e-1228.04Protein MONOCULM 1 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank description254 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 376 5, mRNA sequence.