GO241605

Overview
NameGO241605
Unique NameGO241605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.263e-32
Identity = 61/114 (53.51%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   76 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATV 414
            AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KV+VDEL++VA+E+ VEAMPTFVL K+G V++++VGA+K++L   + +H  V
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGV 116          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   76 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERH 405
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKV+VDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + +H
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   76 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERH 405
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKV+VDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + +H
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATV 414
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KV+VDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + +H+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATV 414
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KV+VDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + +H+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATV 414
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KV+VDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + +H+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   76 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVER 402
            +E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K++VDEL  VA+E+ V AMPTFVL K GK +ERI+GAKKDEL+  V +
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKV+VD + +VAE   + AMPTF + K+G   + +VGA +D+L+  V +HA
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 111          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.682e-18
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL V+VDEL   +  W ++A PTF   K G+ + ++VGA K ELQ  V
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  142 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATV 414
            +A  KL+V+DF A WC PCK+++P L ELA +    V+ LKVNVDE + +  E+ V +MPTFV  K G VLE  VG   D+L   +E+HA V
Sbjct:   17 LAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAGV 108          
The following BLAST results are available for this feature:
BLAST of GO241605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
TRXH2_BRANA3.263e-3253.51Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_ORYSJ5.210e-3050.91Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.210e-3050.91Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL5.760e-2952.73Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA5.760e-2952.73Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA7.523e-2952.73Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH8.908e-2245.87Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE3.168e-1944.95Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH9_ARATH2.682e-1840.38Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
THIOT_DROME1.331e-1748.91Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank description253 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 375 5, mRNA sequence.