GO241605

Overview
NameGO241605
Unique NameGO241605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 36/100 (36.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   85 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDEL 384
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL ++VDEL   +  W ++A PTF   ++G+ ++++VGA K EL
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  148 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERH 405
            A  L+++DF A WC PCK+++P+L  LA +LP V  LKV++D     AE+++V ++PT +L K+GK +ER VG K KD L   + +H
Sbjct:   15 ASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  127 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            +    IA  KL+VVDF A+WC PCK+++P++ + +++ P   F K++VDEL  VA++  V AMPT +L K GK + ++VGA    ++ A+  +A
Sbjct:   10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 103          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16
Identity = 36/85 (42.35%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIK 102          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  148 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERH 405
            A  L++VDF A WC PCK+++P+L  LA +LP V  LK+++D     AE++ V ++PT +L K+GK +ER VG K KD L   + +H
Sbjct:   15 ASGLVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.627e-15
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  124 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+V+VD+ + VA +  V+ MPTF   K+G+ +    GA K++L+ ++  +A
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  151 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHATVE 417
            +K+I++DF A+WC PCK ++P+  ELA     +IF KV+VDE + +  ++ V+ MPTF+  K G  +E + G  +DEL+  V  H + +
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVSAQ 115          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of GO241605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
TRXH_POPJC1.127e-1636.00Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_CHLTR4.282e-1644.83Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TRX1_YEAST7.304e-1640.43Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_HORSE7.304e-1642.35Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_CHLMU1.246e-1544.83Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_SHEEP1.627e-1542.86Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG2.125e-1542.86Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_MOUSE2.125e-1540.21Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO1_CAEEL2.125e-1539.33Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_HUMAN2.775e-1544.05Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank description253 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 375 5, mRNA sequence.