GO241605

Overview
NameGO241605
Unique NameGO241605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  160 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            +V+DF A+WC PCK+M P L++L +  P V F+K +VDE   +A+E  V AMPTFVL K+G+++ +I+GA    L+  ++
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 125          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERH 405
            A  KLIVVDF+A+WC PCK++ P    + +K P V+F++++VD+ + VA    V+ MPTF   K  + +    GA K++L+ A++++
Sbjct:   18 AGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+V+VD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++V+VD+ K +A E  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 35/88 (39.77%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  148 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERHA 408
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KVN+D+  + AE++ V ++PT +L K+GK ++R+VG K KD L   + +H+
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQHS 102          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.183e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  124 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+V+VD+ + VA +  V+ MPTF   K+G+ +    GA K++L+  +   A
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.183e-15
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  124 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            + L+  I   KL+V DF A+WC PCK ++P L  +AK+   VIF+K++VDE + VAE++ V AMPT ++ K G  +  +VGA +  ++  ++ +A
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQANA 107          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   88 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            +V+   + ESWN  + +       IV  FTA WC P   M+    ELA      +FL V+VDE+K VA +  V+AMPTF+  K+G  ++++VGA  DE++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
The following BLAST results are available for this feature:
BLAST of GO241605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
THIO_BOVIN2.775e-1542.86Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
TRX3_YEAST3.625e-1545.00Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_OPHHA3.625e-1539.08Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_MACMU3.625e-1542.86Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA3.625e-1542.86Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT4.734e-1541.67Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_CHLCV4.734e-1539.77Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO_RAT6.183e-1540.21Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_ECHGR6.183e-1540.00Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXL4_ARATH8.075e-1538.46Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]

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Properties
Property NameValue
Genbank description253 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 375 5, mRNA sequence.