GO241605

Overview
NameGO241605
Unique NameGO241605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  148 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERHA 408
            A  L++VDF A WC PC++++PIL  LA +LP V   K+N+DE    AE + V ++PT +L K+G  + R+VG K K+ L   + +HA
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKHA 102          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVL-ERIVGAKKDELQLAVERH 405
            A  KL+V+DFTASWC PC+ ++P   E+AK+ P VIF KV+VDE    AE   ++AMPTF   K GK L + + GA +  L+  ++++
Sbjct:   18 AGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F++++VD+ + VA    V+ MPTF   K GK ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  121 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVI-FLKVNVDELKSVAEEWAVEAMPTFVLAKEGK 345
            N++LQK +++   +VVDF A WCPPCK ++P+  +L+ K  +P V+ F KVNVD ++  A+++ + AMPTF+  KEGK
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGK 85          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  121 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQ 387
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL+ +    V+ LKV+VDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  142 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            +   KL+VVDF A+WC PCK ++P   + +       F+KV+VD+L  +A E  V AMP+F L K G+ +E IVGA   +L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  142 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHA 408
            I+  +L++VDF A WC PCK ++P   E +K    ++F+KV+VDE+  V E+  + +MPTF + K G  ++ ++GA    L+  +E++A
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 39/107 (36.45%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   88 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVER 402
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  + ++K  A  ++F KV+VD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V++
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  142 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVERHAT 411
            + AK L+VV F A W P C  M+ +++ELAK+LP V F+K+  + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V+RHA+
Sbjct:   28 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 117          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.234e-14
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTF-VLAKEGKVLERIVGAKKDELQLAV 396
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+V+VD+ + VA E  V+ MPTF    K+G+ +    GA K++L+  +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
The following BLAST results are available for this feature:
BLAST of GO241605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
THIO_CHLPN8.075e-1543.18Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_GEOCY1.055e-1445.45Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_CHICK1.377e-1440.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_FUSCU1.799e-1446.15Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO2_DROYA1.799e-1445.56Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRX1_SCHPO4.008e-1440.70Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PLAF74.008e-1437.08Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_COPCM4.008e-1436.45Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
GLRX3_HUMAN4.008e-1438.89Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO_PONAB5.234e-1443.53Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank description253 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 375 5, mRNA sequence.