GO241605

Overview
NameGO241605
Unique NameGO241605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 30/88 (34.09%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  127 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVG-AKKDELQ 387
            +L + ++  K +VVDF A+WC PCK++ PI  E+A+      F+KV+VD+   ++ E+ + ++PT +  ++GK+ ++ +G   K+EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 31/86 (36.05%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  154 KLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGA-KKDELQLAVERH 405
            K ++VDF ASWC PC ++ P++ +LA       I  K+NVDE  ++A ++ + ++PT ++ K GKV++++VGA  K+ +   ++ H
Sbjct:   21 KAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  106 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK 372
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KVN DE + ++ ++ + ++PT +  K+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  106 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK 372
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KVN DE + ++ ++ + ++PT +  K+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 29/84 (34.52%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAV 396
            A ++L+ VDF+A+WC PC+ + P    L+ K   V+FL+V+ D  + V  E A+  +PTF   K+ + ++ + GA K++L+  +
Sbjct:  466 AGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVI 549          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   61 IIIKMAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGA-KKDELQLAVERH 405
            ++ K +E  + +      SW E +   + ++  ++VDF A WC PCKL++P++ ELAK+    I + K+N DE   +A ++ + ++PT +  K G+  E I+GA  K  L  ++E++
Sbjct:   65 VVCKASEAVKEVQDVNDSSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 178          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 35/102 (34.31%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  106 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERH 405
            T  ++++ +Q G+      +VDF A+WC PCK+++P+L ELA         LK++VDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +E+H
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  106 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL-PAVIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERH 405
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K++VDE +  A ++ V ++PT ++ K+G+V+E  VG K K+ LQ  V +H
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  145 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVNVD-ELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAKKDELQLAVE 399
            A  K +V+D    WC PCK M+P   +LA++   VIFLK++ + E K++A+E  +  +PTF + KE  V+  + GAK D+L  A++
Sbjct:  100 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQ 185          
BLAST of GO241605 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 35/102 (34.31%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  106 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVNVDELKSVAEEWAVEAMPTFVLAKEGKVLERIVGAK-KDELQLAVERH 405
            T  +++E +Q G+      +VDF A+WC PCK+++P+L ELA         LK++VDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +++H
Sbjct:    7 TDSNFDENIQSGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
The following BLAST results are available for this feature:
BLAST of GO241605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
THIO_MYCGA6.398e-1234.09Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CHLLT1.862e-1136.05Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_HELPY2.431e-1134.44Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.431e-1134.44Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
TXND2_HUMAN3.175e-1134.52Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRXM_SPIOL3.175e-1131.62Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_STAS13.175e-1134.31Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_BACSU3.175e-1134.31Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
TRXF_SPIOL4.147e-1139.53Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
THIO_STAHJ4.147e-1134.31Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]

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Properties
Property NameValue
Genbank description253 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 375 5, mRNA sequence.