GO241602

Overview
NameGO241602
Unique NameGO241602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 66.2402 bits (160), Expect = 1.610e-11
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 253
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 126          

HSP 2 Score: 23.0978 bits (48), Expect = 1.610e-11
Identity = 10/29 (34.48%), Postives = 13/29 (44.83%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSDWEKKFEASTH 362
            D    L  LT  +   LSDW+ +F    H
Sbjct:  137 DEYDDLSDLTPAQQETLSDWDSQFTFKYH 165          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 1.611e-11
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 253
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA
Sbjct:   71 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 125          

HSP 2 Score: 23.0978 bits (48), Expect = 1.611e-11
Identity = 10/29 (34.48%), Postives = 13/29 (44.83%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSDWEKKFEASTH 362
            D    L  LT  +   LSDW+ +F    H
Sbjct:  136 DEYDDLSDLTPAQQETLSDWDSQFTFKYH 164          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 253
            +FTPA+L +Y+G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA
Sbjct:   72 DFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 126          
The following BLAST results are available for this feature:
BLAST of GO241602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PGRC1_MOUSE1.610e-1155.36Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN1.611e-1155.36Membrane-associated progesterone receptor componen... [more]
PGRC1_RAT4.511e-1157.14Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank description250 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 371 5, mRNA sequence.