GO241483

Overview
NameGO241483
Unique NameGO241483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241483 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  168 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGV 479
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GV
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGV 131          
BLAST of GO241483 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 3
Query:  150 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGV 479
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGV 121          
BLAST of GO241483 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 3
Query:  198 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGV 479
            R+    A    D KE   A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GV
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGV 130          
BLAST of GO241483 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  231 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGV 479
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GV
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGV 137          
The following BLAST results are available for this feature:
BLAST of GO241483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HSP21_IPONI1.897e-1138.3217.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP16_ORYSJ4.227e-1135.3416.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP23_MAIZE5.520e-1141.4917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE5.520e-1143.3717.5 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank description131 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 228 5, mRNA sequence.