GO241482

Overview
NameGO241482
Unique NameGO241482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGT-SATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKS-FCWEAYGSSVGQVEPP 424
            G  NS   + +I V   +I ++ NG+R+KTWQGG+GS +N+ F ++ M+NV N II+DQYYC S   C N+TSAVKV ++ + +IKGT       I FACSD   C  + + +V+L+   G +    FCW AYG       PP
Sbjct:  313 GVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSK-DCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDDPFCWNAYGKQETLTIPP 454          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.362e-26
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G+ NS   +  + V  A   +TQNG+RIKTWQGGSG A+ I + +V M N  NPI+I+Q+YC S   C NQ SAV+++ +T+ +I GTSAT  AI+  CSD  PC G+ L +V L   SG  A      A G   G++ P
Sbjct:  286 GRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLIP 425          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATN-IQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPC 430
            GK  +   +  I +    I+NT NG RIKTW G  G A + I F D+ M NVS+PI+IDQ YC       N+ S VK+ NI+F +I+GTSA  EAIKF CS  SPC+ + L D+ +  +    A S C      ++G++ P PC
Sbjct:  252 GKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLNPIPC 395          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTW-QGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPC 430
            GK      + ++ V     S TQNG+RIK+W +  +G A NI F    M NV NPI+IDQ+YC     C  Q S V++ ++T+  I GTSATE A+KF CS   PC  + LEDV+L ++    A+S C  A G++ G V+P  C
Sbjct:  250 GKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKL-TYKNQAAESSCSHADGTTEGVVQPTSC 392          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.455e-25
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATN-IQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPC 430
            GK  +   +  I +    I+NT NG RIKTW G  G A + I F D+ M NVS+PI+IDQ YC       N+ S VK+ NI+F +I+GTSA  EAIKF CS  SPC+ + L D+ +  +    A S C      + G++ P PC
Sbjct:  252 GKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPATSQCLNVKPITSGKLNPIPC 395          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.288e-21
Identity = 63/145 (43.45%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGS-ATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVS-HSGGIAKSFCWEAYGSSVGQVEPPPC 430
            G++     + ++ V       T NGVRIKTW   S S A NI F  + MK V NPIIIDQ+YC    PC  Q S VKV N+ +  I GTS TE A+   CS + PC G+ ++DV LVS H    A++ C  A GS+   V   PC
Sbjct:  256 GRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHK-PCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRP--AQASCDNANGSANDVVPFTPC 397          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.098e-21
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYY--CDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQL---VSHSGGIAKSFCWEAYGSSVGQVEPPPCFACS 442
            GK   +  + ++ V       T NG RIKTWQGGSG A  I F  + + NV NPIIIDQ+Y   DS      ++SAV+V  + F +  GTS +E  + F CS+  PC  +FL D+++    S SG +A+  C    G+S   V    C   S
Sbjct:  241 GKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELS 392          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.658e-21
Identity = 58/145 (40.00%), Postives = 79/145 (54.48%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTW-QGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLV-SHSGGIAKSFCWEAYGSSVGQVEPPPC 430
            G+  +   +  I V    I+ +QNGVRIKTW +   G A+ + F D+ M +V  PI+IDQ YC      A   S+VK+  I+F +IKGTS T+EA+K  CS   PC G+ L D+ L  S  GG A S C     +  G+  P  C
Sbjct:  210 GRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAIC 354          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.658e-21
Identity = 62/146 (42.47%), Postives = 80/146 (54.79%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG--GIAKSFCWEAYGSSVGQVEPPPC 430
            G+  +   +  + V   LI NT NGVRIKTW G   G A+NI F D+ M NVS P++IDQ YC      A   S VK+ ++T   IKGTSAT+ A+K  CS   PC  + L D+ LV H+G  G A S C        G++ P  C
Sbjct:  292 GRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLV-HNGKEGPAVSACSNIKPILSGKLVPAAC 436          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.937e-20
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 2
Query:   35 IMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG--GIAKSFCWEAYGSSVGQVEPPPCFA 436
            + V     +NT NGVRIKTW     G   ++ F D++++NVSNP++IDQ YC       +  S VK+  ++F +IKGTS T++A+    S   PCEG+ + D+  +++SG  G AKS C     S  G+  PP C A
Sbjct:  255 VFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDID-ITYSGKEGPAKSSCENIKPSLKGKQNPPVCTA 390          
The following BLAST results are available for this feature:
BLAST of GO241482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR4_ARATH1.809e-2642.66Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR2_CHAOB2.362e-2645.00Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_GOSBA1.172e-2542.36Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR_PRUPE1.531e-2542.36Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR_GOSHI4.455e-2542.36Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]
PGLR6_ARATH2.288e-2143.45Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR3_ARATH5.098e-2138.16Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR_OENOR6.658e-2140.00Exopolygalacturonase (Fragment) OS=Oenothera organ... [more]
PGLR2_ARATH6.658e-2142.47Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
PGLR_TOBAC1.937e-2039.42Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]

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Properties
Property NameValue
Genbank description130 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 226 5, mRNA sequence.