GO241482

Overview
NameGO241482
Unique NameGO241482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.653e-19
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQL-VSHSGGIAKSFC 382
            G+ N+   +  I V G   S T NGVR+KTW     G+AT++ F D+ M NV NP+I+DQ YC          S +K+ NI F +I+GTS  + A+  ACS   PC  + + ++ L    +GG A S C
Sbjct:  231 GRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTC 359          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   26 IHDIMVYGALISNTQNGVRIKTWQGGSGSAT--NIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG--GIAKSFCWEAYGSSVGQVEPPPC 430
            + DI V    +  T NG+RIKTW   + + T   I F D+++  VSNPI+IDQ YC       N+ S +K+ +ITF +I+GTS  ++A+K  CS   PCE + + D+  + ++G  G     C       VG   P  C
Sbjct:  249 VTDITVKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDIN-IEYTGPDGPPTFECTNVTPKLVGAQNPKAC 386          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSG--SATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSF--CWEAYGSSVGQVEPPPCF 433
            G+      + DI V    +  T NGVRIK ++  +   +A+ I + ++ M++   PIIID  YC + +  AN  S V V+++TF +I GTS+T EA+   C+   PC G+ ++DV  + +SG   K+   C  A GS+ G ++   CF
Sbjct:  264 GRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVN-IKYSGTNNKTMAVCKNAKGSAKGCLKELACF 410          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.299e-16
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSAT--NIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQL 346
            GK  +   +  I V    ++ T NGVRIKTW    G+ T  +I F D+ M NV NP+IIDQ Y           S +K+  I+F ++KGTS T E +   CS   PC+G+ L +V L
Sbjct:  250 GKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDL 366          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSAT--NIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAK--SFCWEAYGSSVGQVEPPPCF 433
            G+      + DI V    +  T  GVRIK ++  +   T   I + ++ M++ +NPI ID  YC + +  AN  S V V+++TF +I GTS+T EA+   C+   PC G+ ++DV  V +SG   K  + C  A GS+ G ++   CF
Sbjct:  264 GRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVN-VEYSGTNNKTMAICTNAKGSTKGCLKELACF 410          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSAT--NIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAK--SFCWEAYGSSVGQVEPPPCF 433
            G+      + DI V    +  T  GVRIK ++  +   T   I + ++ M++ +NPI ID  YC + +  AN  S V V+++TF +I GTS+T EAI   C+   PC G  ++DV  V +SG   K  + C  A GS+ G ++   CF
Sbjct:  264 GRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVN-VEYSGTNNKTMAICTNAKGSTKGCLKELACF 410          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGS-ATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQL----------VSHSGGIAKSFCWEAYGSSVGQVEPPPC 430
            GK  +   +  I V    +  T NG+RIKTW G   S A +I+F +++M++V NPIIIDQ Y           S V + +I F +I+GT+ T++ ++  CS   PC+G+ + DV L           S SGG+  + C  A     G++  P C
Sbjct:  272 GKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSR-----GGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDYVGKTGGEKKSSSGGLVGALCDNANVIFGGKLSFPMC 420          
The following BLAST results are available for this feature:
BLAST of GO241482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR2_PLAAC3.653e-1938.76Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]
PGLR_BRANA1.535e-1735.97Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR3_MAIZE7.617e-1734.46Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR_MEDSA1.299e-1639.32Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR1_MAIZE2.895e-1634.46Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_MAIZE3.780e-1635.14Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_ARATH2.450e-1533.77Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank description130 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 226 5, mRNA sequence.