GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.570e-41
Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKH VFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+V  +     +      +GFTK+  NQ K
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTT-DSYTLRMFCIGFTKKRANQQK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAP+ F VRNVGKTLVTRTQGTKIASE LK  VFEVSL DL   E+ A+RK+RLR EDVQG+N LTNFWGM+FTTDKLRSLVRKW TLIEA+V  +  D   L +     + FTK+   Q+K
Sbjct:   28 DWYDIKAPTMFTVRNVGKTLVTRTQGTKIASEALKGRVFEVSLADLQKNEDDAFRKMRLRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVF---CISFTKKRQGQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRN+GKTLV+RTQGTKIAS+GLK  +FE+SL DL N+E+ ++RK++L+ EDVQGKNVLTNF GM+FTTDK+RSLVRKW +LIE +V  +  D   L +     +GFTKR  +Q K
Sbjct:   28 DWYDIKAPSMFSVRNIGKTLVSRTQGTKIASDGLKGRIFEISLADLNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVF---CIGFTKRRMDQAK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.841e-37
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAPS F VRN+GKTLVTRTQG K+AS+GLK  VFEVSL DL N+E+ ++RK RL +ED+QGKNVLTNF GM  TTDKLR+LV+KW TLIEA V  +     ++     +GFTKR PNQ+K
Sbjct:   28 DWYDVKAPSMFAVRNIGKTLVTRTQGKKLASDGLKGRVFEVSLADLQNDEQ-SFRKFRLISEDIQGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTT-DGYLLRLFCIGFTKRQPNQIK 150          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.906e-36
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRNVGKTLV R+QG K A++ LK  + EVSLGDL  EEE ++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW TLIEA+V  +     ++    A+GFTKR P QV+
Sbjct:   28 DWYDIKAPSIFDVRNVGKTLVNRSQGLKNANDSLKGRIIEVSLGDLNKEEEQSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTT-DGYLLRLFAIGFTKRRPTQVR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35
Identity = 74/127 (58.27%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWY++KAP  F +R+VGKTLV RT G K A++ LK  +FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA   V   D    ++    A+GFTKR PNQ+K
Sbjct:   27 DWYNVKAPGTFAIRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDD---YLLRLFAIGFTKRRPNQIK 150          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 75/127 (59.06%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK  + EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V  Q  DH   ++    A+ FTKR PNQ+K
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDH---YLLRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK  + EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM+FT+DKLRSLVRKW TL+EA+V  +     ++    A+GFTKR P+QV+
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTT-DGYLLRLFAIGFTKRRPSQVR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ + VRN+GKT V RTQGTKIASEGLK  VFEVS  DL N E+ AYRK RL AE+VQG+NVLTNF GM+ TTDKLRS+V+KW TLIEA V  +     ++     +GFTK+  NQ+K
Sbjct:   29 DWYDVKAPTMYTVRNIGKTFVNRTQGTKIASEGLKGRVFEVSQADLTNGED-AYRKFRLIAEEVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEATVDVRTT-DGYLLRMFCIGFTKKCANQLK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 78/125 (62.40%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAPS F VRN+GKTLV RT GTKIAS+GLK  VFEVSL DL N  E A+RK RL AE+V GK+VLTNF GM+ T+DKL+SLV+KW TLIEA++  +     ++    A+GFTK+ PNQ+K
Sbjct:   28 DWYDVKAPSQFAVRNIGKTLVNRTSGTKIASDGLKGRVFEVSLADLQN-GEIAFRKFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTT-DGYLLRFFAIGFTKKRPNQIK 150          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_DAUCA2.570e-4169.6040S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_CHLRE3.142e-3966.9340S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_OSTLU7.739e-3862.9940S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_SUBDO3.841e-3764.0040S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_LENED1.906e-3663.2040S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_PHANO4.695e-3558.2740S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_PODAN6.132e-3559.0640S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_LACBS6.132e-3559.2040S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_IXOSC6.132e-3562.4040S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_TRIAD1.046e-3462.4040S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.