GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS6 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS1 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.082e-31
Identity = 71/127 (55.91%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF G++ TTDK RS+VRKW TLIEA V  +  D    ++    A+ FT+R PNQVK
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKNASDYLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGLDLTTDKYRSMVRKWQTLIEANVTVKTADE---YVLRVFAIAFTRRQPNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.846e-31
Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F  RNVGKTLV ++ G K A++ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF G++FTTDKLRS+VRKW TLIEA V  +  D    ++    A+ FT+R  NQ+K
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKNAADFLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGLDFTTDKLRSMVRKWQTLIEANVTVKTADD---YVLRVFAIAFTRRQSNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.846e-31
Identity = 70/127 (55.12%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAP+ F V+NVGKTLV RT G K A++ LK  + EVSL DL  +EEHA+RK++LR ED+QGK+ LT+F G++ T+DKLRSLVRKW T IEA   +   D    ++     +GFT+R  NQVK
Sbjct:   28 EWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDG---YLCRVFVIGFTRRRANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.149e-31
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K A++ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDK+RS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNAADALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKVRSMVRKWQTLIEANVTVKTS-DDYVLRVFAIAFTRKQSNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.149e-31
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F V+NVGKTLV RT G K A++ LK  + EVSL DL  +EEH++RK++LR +DVQGK  LT F GM+ T+DKLRSLVRKW T IEA   +   D    ++     +GFT+R  NQ+K
Sbjct:   28 DWYDIKAPSFFEVKNVGKTLVNRTAGLKNANDALKGRIVEVSLADLQKDEEHSFRKVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDG---YVCRIFVIGFTRRRYNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.563e-30
Identity = 69/127 (54.33%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAP+ F V+NVGKTLV RT G K A++ LK  + EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +   D    ++     +GFT R  NQVK
Sbjct:   28 DWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDG---YLCRIFVIGFTSRRVNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.041e-30
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAPS F VR+VGKT+V RT G K A++ LK  +FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V  +  D    ++    A+ FTKR   QVK
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDD---YLVRLFAIAFTKRRSFQVK 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A2_YEAS68.288e-3256.0040S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS28.288e-3256.0040S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS18.288e-3256.0040S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_LACTC1.082e-3155.9140S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_ASHGO1.846e-3155.1240S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]
RS3A2_SCHPO1.846e-3155.1240S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_VANPO3.149e-3155.2040S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_SCHJY3.149e-3155.9140S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A1_SCHPO1.563e-3054.3340S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_COCP72.041e-3056.6940S ribosomal protein S1 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.