GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.596e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+  VFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.596e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+  VFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.596e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+  VFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQV 588
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+  V+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V  +  D   L +     + FTK+  NQ+
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLF---VIAFTKKQSNQL 152          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.504e-20
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQV 588
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+  V+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V  +  D   L +     + FTK+  NQ+
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLF---VIAFTKKQSNQL 152          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA 504
            +WY++KAP+ F     GKT+VT++   +  +  L    F+++  DL  N EEHA RK   R  +V+GK+ +  F GM+ T+DK++ ++RKWHTLIEA
Sbjct:   30 EWYNLKAPAIFPNNVCGKTMVTKSSNKQNLALLLIGRKFDINQADLTGNLEEHA-RKFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEA 125          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            +WY + AP+ F+ R++G+T VT+T G ++A++ + H V+EV+LGDL    E+ +   K  L+ + V     LTNF GM+ T  K  SL RK    I+ ++
Sbjct:   26 EWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFM 125          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_LEIMA8.596e-2149.0040S ribosomal protein S3a OS=Leishmania major GN=L... [more]
RS3A2_LEIIN8.596e-2149.0040S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN8.596e-2149.0040S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A2_TRYCR7.277e-2042.1940S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR9.504e-2042.1940S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_NOSCE4.569e-1442.2740S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GIALA5.585e-1238.0040S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.