GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAPS F++R+VGKTLV RT G K A++ LK  +FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V  +  D    ++    A+ FTKR PNQ+K
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDD---YLLRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAPS F+ R+VGKTLV RT G K A++ LK  +FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA +  +  D    ++    A+ FTKR PNQ+K
Sbjct:   28 DEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDD---YLLRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 73/127 (57.48%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWY IKAP+ F +R+VGKTLV R+ G K A++ LK  +FEVSL DL  +E+HA+RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V  +  D    ++    A+ FTKR PNQ+K
Sbjct:   28 DWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDD---YLLRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F  RN GKTLV RTQG K A++ LK  V E+SL DL N++E ++RKI+LR EDV GK+ LT+F+GM+FTTDKLRS+VRKW +L+EA+V  +     ++    A+GFTKR  NQVK
Sbjct:   28 EWYDIKAPSFFENRNAGKTLVNRTQGLKNANDSLKGRVLELSLADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTT-DGYVLRLFAIGFTKRQSNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.510e-33
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA 504
            DWYD+KAP  F  R VGKTLV RTQGTKIASEGLKH VFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GM+ TTDKLRS+V+KW +LIEA
Sbjct:   29 DWYDVKAPCMFATRQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQSLIEA 126          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_PENMQ1.156e-3357.4840S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_PENCW1.156e-3356.6940S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_MAGGR1.156e-3357.4840S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_CRYNE1.156e-3358.4040S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_BIPLU1.510e-3372.4540S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A_TAEGU1.973e-3358.4040S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT1.973e-3358.4040S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE1.973e-3358.4040S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_MACFA1.973e-3358.4040S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_HUMAN1.973e-3358.4040S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.