GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 147          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK  V EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +     ++    A+ FTKR  NQ+K
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGLKNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTS-DDYVLRVFAIAFTKRQANQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.576e-33
Identity = 74/125 (59.20%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQV+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQVR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.576e-33
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK  VFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +  D    ++    A+ FTKR  NQ+K
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADD---YVLRVFAIAFTKRQANQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.365e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.365e-33
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK  VFEVSL DL N  + E +YRK RL AEDVQ +NVLTNF GM+ TTDKLRS+V+KW TLIEA V
Sbjct:   29 DWYDVKAPSMFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.365e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_GECJA1.973e-3358.4040S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_FELCA1.973e-3358.4040S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_EIMTE1.973e-3358.4040S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_BOVIN1.973e-3358.4040S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A2_PICST1.973e-3357.6040S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_ORYLA2.576e-3359.2040S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_CANTT2.576e-3356.6940S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_XENTR3.365e-3358.4040S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TRIIF3.365e-3372.0040S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3AB_XENLA3.365e-3358.4040S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.