GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.365e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.739e-33
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRTNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 5.739e-33
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRTNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK  V+EVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTKR  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVYEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKRRNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 71/125 (56.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLV+RTQGT+IAS+GLK  VFEVSL DL N+E  A+RK +L +EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVSRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLISEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRTNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL D  N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADFQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKHNNQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 71/127 (55.91%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK  VFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +  D    ++    A+ FTKR  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADD---YVLRVFAIAFTKRQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 71/127 (55.91%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK  VFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +  D    ++    A+ FTKR  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADD---YVLRVFAIAFTKRQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 9.790e-33
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAP   R    G+    RT GTKIAS+GL   VFEVSL DL N+E+ A+RKI+LRAEDVQGKNVLTNFWGM+FTTDKLRSLVRKW +LI+A+V  +  D+  + I     + FTK+ PN  +
Sbjct:   28 DWYDIKAPPRSRRARSGRRC-HRTAGTKIASDGLNFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIF---CIAFTKKRPNHTR 150          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 9.790e-33
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN L NF GM+ T DK+ S+V+KW T+IEA++  +     ++     +GFTK+  NQ++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTT-DGYLLRLFCVGFTKKRTNQIR 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3AA_XENLA3.365e-3358.4040S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_SOLSE5.739e-3357.6040S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_DANRE5.739e-3357.6040S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_TETNG7.496e-3357.6040S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_SALSA7.496e-3356.8040S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_CALJA7.496e-3357.6040S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A2_CLAL47.496e-3355.9140S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL47.496e-3355.9140S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_TORRU9.790e-3359.8440S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_OPHHA9.790e-3356.8040S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.