GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.279e-32
Identity = 79/127 (62.20%), Postives = 90/127 (70.87%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK  VFEVSLGD LN  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   V   D   L +     + FTK+  NQVK
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGD-LNNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF---VIAFTKKSANQVK 149          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.279e-32
Identity = 71/127 (55.91%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK  + EV+L DL   E+H+YR ++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +  D    ++    AL FTKR  NQVK
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGMKNAADGLKGRIVEVNLADLQGSEDHSYRNVKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADD---YVLRVFALAFTKRQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 72/127 (56.69%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAPS F  R+VGKTLV RT G K A++ LK  +FEVSL DL  +E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V  +  D    ++    A+ FTKR PNQ+K
Sbjct:   28 DEYSVKAPSTFANRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQGDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDD---YLLRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR +DVQGKN+LTNF GM+FT DKLRS+VRKW TLIEA V  +     +I    A+ FT++  NQVK
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDDVQGKNLLTNFHGMDFTADKLRSMVRKWQTLIEANVTVKTS-DEYIIRVFAIAFTRKQSNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 79/127 (62.20%), Postives = 90/127 (70.87%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEA--YVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK  VFEVSLGD LN  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   V   D   L +     + FTK+  NQVK
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGD-LNNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF---VIAFTKKSVNQVK 149          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.848e-32
Identity = 71/125 (56.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F+ RNVGKTLV R+ G K AS+ LK  V E  L DL   E+H++RKI+LR ++VQGKN+LTN  GM+FTTDK RS+VRKW TLIEA V  +     ++    A+ FT++ PNQVK
Sbjct:   28 EWYDIKAPSTFKNRNVGKTLVNRSAGLKSASDTLKGRVVEACLADLQGSEDHSFRKIKLRVDEVQGKNLLTNIHGMDFTTDKYRSMVRKWQTLIEAQVTVKTS-DEYVIRVFAIAFTRKQPNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.720e-32
Identity = 69/125 (55.20%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAP+ F  R VGKTL+ ++ G K A++GLK  V EV+L DL   E+HAYRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V  +     ++    A+ FTKR PNQVK
Sbjct:   28 EWFDIKAPTTFENRAVGKTLINKSTGLKNAADGLKGRVIEVNLADLQGSEDHAYRKVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLR-VFAIAFTKRQPNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.720e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.720e-32
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK  VFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GM+ T DKL S+V+KW TLIEA V  +     ++    A+GFTK+  NQVK
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTT-DGYLLRVFAIGFTKKRNNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK  V+EVSLGD LN  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V  +     ++     +GFTK+   Q+K
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGD-LNNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTS-DGYLLRLFCIGFTKKNARQLK 148          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_CAEBR1.279e-3262.2040S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A1_PICST1.279e-3255.9140S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_EMENI1.670e-3256.6940S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_CANGA1.670e-3257.6040S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]
RS3A_CAEEL1.670e-3262.2040S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_ZYGRC2.848e-3256.8040S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_PICGU3.720e-3255.2040S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_KLULA3.720e-3256.8040S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_APLCA3.720e-3260.0040S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_BRUMA4.859e-3259.2040S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.