GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAST (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae GN=RPS1A PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS7 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS6 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.859e-32
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.346e-32
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWY+IKAPS F  R+VGKTLV R+ G ++A++ LK  V EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G +FT+DKLRSLVRKW TLIEA V  +  D   L +     +GFTKR  NQVK
Sbjct:   28 DWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLF---VIGFTKRQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAP+ F+VR+VGKTLV RT G K A++ LK  VFEVSL DL  +E H++RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V  +  D    ++    A+ FTKR PNQ+K
Sbjct:   28 DEYLVKAPTTFQVRDVGKTLVNRTTGLKNANDYLKGRVFEVSLADLQKDEAHSFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDD---YLVRLFAIAFTKRRPNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 71/127 (55.91%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAY--VGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK  + E SL DL  ++E AYRK +LR ++VQG+N LTNF+GM+FT+DKLRSLVRKW +LIEA+  +   D    ++    A+GFT+R  NQVK
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDG---YLLRVFAIGFTRRRANQVK 150          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS7 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.288e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK  V EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V  +     ++    A+ FT++  NQVK
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTS-DDYVLRIFAIAFTRKQANQVK 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A1_YEAST4.859e-3256.8040S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS74.859e-3256.8040S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS64.859e-3256.8040S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS24.859e-3256.8040S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS14.859e-3256.8040S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A_YARLI6.346e-3256.6940S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_NANOT8.288e-3257.4840S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_MALGO8.288e-3255.9140S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A2_YEAST8.288e-3256.0040S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS78.288e-3256.0040S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.