GO241470

Overview
NameGO241470
Unique NameGO241470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241470 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.423e-32
Identity = 56/126 (44.44%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   91 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEG 468
            +LVL +GD HIP RA  L  KF+ +L+PGKI  I+C GNL    V++YLK +C DL +++G +D  ++ P    +T+G FK+G  +GH V+P    ++L++L R++D DIL+ G TH+F AY+ +G
Sbjct:    1 MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDG 126          

HSP 2 Score: 30.4166 bits (67), Expect = 6.423e-32
Identity = 17/32 (53.12%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  479 INPGSATGA--FSSITYD--VNPSLVLMDIDG 562
            +NPGSATGA   S++  D  + PS VLMD+ G
Sbjct:  130 VNPGSATGAPNVSAVEDDEKIVPSFVLMDVQG 161          
BLAST of GO241470 vs. ExPASy Swiss-Prot
Match: PEP11_YEAST (Vacuolar protein sorting-associated protein 29 OS=Saccharomyces cerevisiae GN=VPS29 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 64/161 (39.75%), Postives = 80/161 (49.69%), Query Frame = 1
Query:   91 VLVLALGDLHIPHRAADLPAKFKSML-VPGKIQHIVCTGNLCIKEVHDYLKI---ICPDLHIIRGEYDEETRYPETKT------------------LTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGCGYKPRFCHRCF 507
            +L+LAL D HIP RA DLP KFK +L VP KI  +   GN    + +D+LK    I  ++ I+RGE+D     P TK                   +  G  K+G C G+ V+P  D  SL  L RQLDVDIL+ G TH   AY  EG     P  C   F
Sbjct:    1 MLLLALSDAHIPDRATDLPVKFKKLLSVPDKISQVALLGNST--KSYDFLKFVNQISNNITIVRGEFDNG-HLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAF 158          
The following BLAST results are available for this feature:
BLAST of GO241470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_SCHPO6.423e-3244.44Vacuolar protein sorting-associated protein 29 OS=... [more]
PEP11_YEAST1.372e-1839.75Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank description118 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 207 5, mRNA sequence.