GO241397 | Citrus Genome Database

Overview


Name	GO241397
Unique Name	GO241397
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:532..1036.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.186e-39
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 3

Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVP 353
            DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIV GKGP+ NLAD LADP  NNA+A A  F P
Sbjct:  177 DPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254

HSP 2 Score: 53.9138 bits (128), Expect = 1.186e-39
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            G+P+LIHAQ+ +A  A QVVLMG +EGY + GGP GE   P+ P
Sbjct:  138 GSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYP 181

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.014e-39
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 3

Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVP 353
            DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIV GKGP+ NL D LA+P  NNA+A+A  F P
Sbjct:  174 DPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251

HSP 2 Score: 55.8398 bits (133), Expect = 2.014e-39
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNPSL+HAQ+ +A  A QV+LMG +EGY + GGP GE   P+ P
Sbjct:  135 GNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYP 178

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.742e-39
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NL D LADPVNNNAWAYA NFVPGK
Sbjct:  186 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 73.9442 bits (180), Expect = 4.607e-13
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG +EGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 208

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.742e-39
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  125 VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY IAGGPLGE   PI P      +G    P  F
Sbjct:   88 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 147

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.742e-39
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  174 VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY IAGGPLGE   PI P      +G    P  F
Sbjct:  137 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 196

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 4.888e-39
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  180 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 37/60 (61.67%), Postives = 39/60 (65.00%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSLIHAQS LA WA QVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  143 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 202

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.089e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  193 VTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQV+LMG VEGY IAGGPLGE   PI P      +G    P  F
Sbjct:  156 GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAF 215

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.089e-38
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAW+YA NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.089e-38
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  184 VVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 37/60 (61.67%), Postives = 39/60 (65.00%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSLIHAQS LA WA QVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  147 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAF 206

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.422e-38
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 73.9442 bits (180), Expect = 4.607e-13
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208

The following BLAST results are available for this feature:

BLAST of GO241397 vs. ExPASy Swiss-Prot

BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
CB2_CHLMO	1.186e-39	80.77	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_CHLRE	2.014e-39	78.21	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB27_TOBAC	3.742e-39	93.90	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB22_CUCSA	3.742e-39	92.68	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB21_CUCSA	3.742e-39	92.68	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_ORYSJ	4.888e-39	93.90	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2B_PINSY	1.089e-38	91.46	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB25_PETSP	1.089e-38	92.68	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_ORYSJ	1.089e-38	92.68	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2G_SOLLC	1.422e-38	92.68	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.