GO241397

Overview
NameGO241397
Unique NameGO241397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:532..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAW +A NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          

HSP 2 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQV+LMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.217e-38
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  197 VTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          

HSP 2 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            G+P LIHAQS LA WACQV+LMG +EGY +AGGPLGE   PI P      +G    P  F
Sbjct:  160 GSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAF 219          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.217e-38
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA NFVPGK
Sbjct:  184 VVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          

HSP 2 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSLIHAQS LA WACQVVLMG +EGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  147 GNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAF 206          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.204e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAW+YA NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          

HSP 2 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.829e-37
Identity = 64/78 (82.05%), Postives = 65/78 (83.33%), Query Frame = 3
Query:  126 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPG 356
            LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NL D L +PV NNAW YA  FVPG
Sbjct:  187 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          

HSP 2 Score: 45.0542 bits (105), Expect = 8.829e-37
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGP 103
            GNP+L+HAQS LA    QVVLMG VEG+ I G P
Sbjct:  146 GNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 179          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.019e-36
Identity = 74/87 (85.06%), Postives = 75/87 (86.21%), Query Frame = 3
Query:   99 GRSVXVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            GR   V DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NLAD L DPVNNNAWAYA NFVPGK
Sbjct:  178 GRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          

HSP 2 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGG LGE   P+        +G G  P  F
Sbjct:  146 GNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERF 205          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.019e-36
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIV GKGPL NLAD +ADPVNNNAWAYA NFVPGK
Sbjct:  184 VVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          

HSP 2 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSLIHAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  147 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 206          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.270e-36
Identity = 75/88 (85.23%), Postives = 76/88 (86.36%), Query Frame = 3
Query:   96 EGRSVXVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            EG      D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  179 EGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.270e-36
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NLAD +ADPV NNAWA+A NFVPGK
Sbjct:  185 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.965e-36
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIV GKGPL NLAD LADPVNNNAW+YA NFVPGK
Sbjct:  147 VVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          

HSP 2 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WA QV+LMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  110 GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAF 169          
The following BLAST results are available for this feature:
BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2A_SPIOL7.058e-3891.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY9.217e-3887.80Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE9.217e-3889.02Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC1.204e-3790.24Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_SOLLC8.829e-3782.05Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB48_MAIZE1.019e-3685.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_MAIZE1.019e-3687.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL2.270e-3685.23Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI2.270e-3688.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA2.965e-3687.80Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank description45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.