GO241397

Overview
NameGO241397
Unique NameGO241397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:532..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.873e-36
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIV GKGPL NLAD L DPVNNNAW+YA NFVP K
Sbjct:  186 VVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          

HSP 2 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQV+LMG VEGY +AGGPLG    P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NL+D LADP  NNAWAYA NF PGK
Sbjct:  184 VEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          

HSP 2 Score: 75.8702 bits (185), Expect = 1.212e-13
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQV+LMG VEGY +AGGPLGE + PI P      +G    P  F
Sbjct:  147 GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAF 206          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 8.627e-36
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL D LADPV NNAWAYA NFVPGK
Sbjct:  186 DPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          

HSP 2 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNP+LIHAQS LA WACQVVLMG VEGY + GGPLGE   PI P      +G    P  F
Sbjct:  147 GNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAF 206          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.127e-35
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  188 DLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.127e-35
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  188 DLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.618e-35
Identity = 63/78 (80.77%), Postives = 64/78 (82.05%), Query Frame = 3
Query:  126 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPG 356
            LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NL D L DPV NNAW +A  F PG
Sbjct:  190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          

HSP 2 Score: 42.743 bits (99), Expect = 1.618e-35
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAG 97
            GNP+L+HAQS LA    QV+LMG VEG+ I G
Sbjct:  149 GNPNLVHAQSILAVLGFQVLLMGLVEGFRING 180          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.510e-35
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL+D +ADPV NNAWAYA NFVPGK
Sbjct:  158 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL D +ADPV NNAWAYA NFVPGK
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            + DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL +LAD +ADPVNNNAW  A NFVPGK
Sbjct:  185 IVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          

HSP 2 Score: 73.9442 bits (180), Expect = 4.607e-13
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  148 GNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAF 207          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL+D + DPV NNAWAYA NFVPGK
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          

HSP 2 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNP+L+HAQS LA WACQVVLMG VEGY + GGPLGE    I P      +G    P  F
Sbjct:  147 GNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAF 206          
The following BLAST results are available for this feature:
BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_PETSP3.873e-3686.59Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_POLMU6.606e-3685.37Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_GOSHI8.627e-3687.50Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_ARATH1.127e-3588.75Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.127e-3588.75Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_HORVU1.618e-3580.77Chlorophyll a-b binding protein of LHCII type III,... [more]
CB25_SOLLC2.510e-3586.25Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC7.303e-3586.25Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_WHEAT7.303e-3584.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.246e-3485.00Chlorophyll a-b binding protein 4, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank description45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.