GO241370

Overview
NameGO241370
Unique NameGO241370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   87 LMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXD---PEQVNAHGGXVSLGHPLGCSGAR 473
            L +LRP F    G+VTAG +S +SDGAAA++++S  +A  LGL   AKIR  A A          P  A  KA+  AGL    ID +E+NEAF   ++   K LG      E+VN +GG ++LGHPLGCSGAR
Sbjct:  219 LSQLRPVFDPVNGTVTAGTSSALSDGAAAMLVMSADRAKALGLTPRAKIRAMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   21 KKGXHPIIVDKDEGLEKFDAAK-LMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLG--XDPEQVNAHGGXVSLGHPLGCSGAR 473
            +KG  P+++D DE        + L KL+   K  GSVTAGNAS I+DGAAA+++ S     +  L+  AKI         P     AP+ AI K +  A L   Q+D  E+NEAF   A+A  + LG   D  +VN +GG ++LGHPLG SGAR
Sbjct:  213 RKG-EPVVIDTDEHPRASTTLEGLAKLKGVVKPEGSVTAGNASGINDGAAAVLIASDEAVAQYQLKARAKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGAR 365          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 62/156 (39.74%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   48 DKDEGLEKFDAAKLMK----------LRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAF---XVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            D D  L++FD  ++++          L+P+F    G+VTAG++S +SDGAAA++++S  +A  LGL V A+IR  A     P      P  A   A+  AGL    I  +E+NEAF    +  I +  LL    E+VN +GG ++LGHPLGCSGAR
Sbjct:  196 DADGALQRFDYDEVIRPDTTVDSLAALKPAFDPVNGTVTAGSSSALSDGAAAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLSDIGLFELNEAFAAQTLPCIKDLGLLEQIDEKVNLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   48 DKDEGLEKFD----------AAKLMKLRPSFKEG-GSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAF---XVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            D D  L+++D          A  L +L+P+F    G+VTAG +S +SDGAAA++++S  +A ELGL   A+IR  A     P      P  A   A+  AGL A  ID +E+NEAF    +  I +  L+    E++N +GG ++LGHPLGCSGAR
Sbjct:  196 DADGVLKRYDFDEVIRPETTAEGLSQLKPAFDPANGTVTAGTSSALSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   87 LMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXD---PEQVNAHGGXVSLGHPLGCSGAR 473
            L  LRP+F    G+VTAG +S +SDGA+A++++   KA  LGL + A+IR  A A          P  A  KA+A AGL    +D  E+NEAF   ++   K LG      E++N +GG ++LGHPLGCSGAR
Sbjct:  219 LAGLRPAFDPVNGTVTAGTSSALSDGASAMLVMEESKARALGLTIRARIRSMAVAGCDAAIMGYGPVPATKKALARAGLSVADLDLIELNEAFAAQSLPCVKDLGLQDVVDEKINLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 3
Query:   84 KLMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDPEQ--VNAHGGXVSLGHPLGCSGAR 473
            ++ KLRP+F   GG+VTA  +S +SDGA+A++++S  KA ELGL+  A+IR  A A          P  A  KA+  AG+    +   E+NEAF    ++  K L    +Q  VN +GG ++LGHPLGCSGAR
Sbjct:  222 QMQKLRPAFDPVGGTVTAATSSALSDGASAMLIMSAQKAKELGLKPRARIRSMAIAGCDAAIMGYGPVPATQKALKRAGMSIDDMQTIELNEAFAAQGLSVLKALNLTDKQDIVNINGGAIALGHPLGCSGAR 354          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 3
Query:   87 LMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQK---LLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  LRP+F    G+VTAG++S +SDGA+A++++S  +A ELGL + A+++  A A   P      P  A  KA+  AGL    I   E+NEAF   ++   K   LL    E+VN +GG ++LGHPLGCSG+R
Sbjct:  219 LSNLRPAFDPVNGTVTAGSSSALSDGASAMLVMSEHRAKELGLTIRARVKSMAVAGCDPSIMGYGPVPATQKALKRAGLSIDDIGMVELNEAFAAQSLPCAKDLGLLDKIDEKVNLNGGAIALGHPLGCSGSR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_ENT38 (3-ketoacyl-CoA thiolase OS=Enterobacter sp. (strain 638) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 3
Query:   87 LMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAF---XVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  LRP+F    G+VTAG +S +SDGAAA++++S  +A ELGL   A+IR  A     P      P  A   A+  AGL A +ID +E+NEAF    +  I +  L+    E++N +GG ++LGHPLGCSGAR
Sbjct:  219 LSALRPAFDPVTGTVTAGTSSALSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASEIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   48 DKDEGLEKFDAAKLMK----------LRPSFKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAF---XVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            D D  L++FD  ++++          L+P+F    G+VTAG++S +SDGA+A++++S  +A  LGL V A+IR  A     P      P  A   A+  AGL    I  +E+NEAF    +  I +  LL    E+VN +GG ++LGHPLGCSGAR
Sbjct:  196 DADGALQRFDYDEVIRPDTTIDSLAALKPAFDPVNGTVTAGSSSALSDGASAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLADIGIFELNEAFAAQTLPCIKDLGLLEQLDEKVNLNGGAIALGHPLGCSGAR 351          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   21 KKGXHPIIVDKDEGLEKFDAAK-LMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLG--XDPEQVNAHGGXVSLGHPLGCSGAR 473
            KKG    +VD DE L      + L KL+P      +VTAGNAS ++DG+ AL+L S     + GL+  AK+ G A A  AP      P  A+ K +    L     D  E+NEAF    +A  + LG   D  +VN +GG ++LGHPLG SGAR
Sbjct:  214 KKGE--TVVDADEHLRPDTTLEALAKLKPVNGPDKTVTAGNASGVNDGSVALILASAEAVKKHGLKARAKVLGMASAGVAPRVMGIGPVPAVRKLLERLNLSVADFDVIELNEAFAAQGLAVTRELGIADDDARVNPNGGAIALGHPLGASGAR 365          
The following BLAST results are available for this feature:
BLAST of GO241370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 273
Match NameE-valueIdentityDescription
FADA_AERHH6.247e-2045.863-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
PCAF_ACIAD8.159e-2041.56Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_PECCP8.159e-2039.743-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_ENTS81.066e-1940.383-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_SHEFN1.392e-1943.613-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_PSYCK1.392e-1942.863-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PHOPR1.392e-1942.863-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_ENT381.392e-1944.363-ketoacyl-CoA thiolase OS=Enterobacter sp. (strai... [more]
FADA_ERWCT2.374e-1939.103-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
PCAF_PSESB3.100e-1940.26Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank description16 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 32 5, mRNA sequence.