GO241370

Overview
NameGO241370
Unique NameGO241370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2185 contig Csv1_Contig2185:677..1410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADI_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   45 VDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFA-DAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDP-----------------EQVNAHGGXVSLGHPLGCSGAR 473
            V  D  +E++      +LRP+F +  G+VTA N++ ++DGAAA++++S  KA  LGL  +  +R +A  A          P+ A   A+A AG+    +   +++EAF    +AN KL   D                   + N  GG ++ GHP   +GAR
Sbjct:  244 VRHDSAIEQYS-----RLRPAFDRRHGTVTAANSTPLTDGAAAVLMMSESKAKSLGLTPLGYLRSYAFSAIGVQRDMLLGPAYASPLALARAGVALADLTLIDMHEAFAAQTLANLKLFASDEFARNQLGRNAALGEVDRAKFNVLGGSIAYGHPFAATGAR 400          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADI_SHEHH (3-ketoacyl-CoA thiolase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 3
Query:   45 VDKDEGL-EKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFA-DAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLG-----------------XDPEQVNAHGGXVSLGHPLGCSGAR 473
            +D+D  + E        KLRP+F ++ GSVTA N++ ++DGA+A++L+S  +A  LG   I  I+ +A  A    +     PS A   A+  AG+E   +   E++EAF    +AN ++                    D  + N  GG ++ GHP   +G R
Sbjct:  238 IDRDNNIRENSTLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTR 400          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADI_ALTMD (3-ketoacyl-CoA thiolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=fadI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 3
Query:   93 KLRPSF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAA-QAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDP-----------------EQVNAHGGXVSLGHPLGCSGAR 473
            KLRP F K+ GSVTA NA+ ++DGA+A+++++  +A ELG   +  I+ +A AA    E     PS A   A+  AG+    +   E++EAF    +AN K+   D                  ++ N  G  ++ GHP   +G R
Sbjct:  255 KLRPVFDKKYGSVTAANATPLTDGASAVLMMTESRAKELGYTPLGYIKSYAFAAIDVWEDMLMGPSYATPIALDRAGMTLNDLTLIEMHEAFAAQTLANVKMFASDKFAKEKLGRDKATGEIDMDKFNVMGSSIAYGHPFAATGTR 400          
The following BLAST results are available for this feature:
BLAST of GO241370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 273
Match NameE-valueIdentityDescription
FADI_ERWCT1.395e-1130.253-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADI_SHEHH1.822e-1130.063-ketoacyl-CoA thiolase OS=Shewanella halifaxensis... [more]
FADI_ALTMD4.059e-1132.193-ketoacyl-CoA thiolase OS=Alteromonas macleodii (... [more]

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Properties
Property NameValue
Genbank description16 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 32 5, mRNA sequence.