GO241370

Overview
NameGO241370
Unique NameGO241370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2185 contig Csv1_Contig2185:677..1410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 67/151 (44.37%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   36 PIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQK---LLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            P ++  DE +      + L KL+P+F  +GG+VTAG +S I+DGA++++++S  KA ELGL  IAKIR  A A   P      P  A  KA+ANAGL    ID  E+NEAF   A+   K   LL    ++VN +GG ++LGHP GCSG R
Sbjct:  205 PTLIKHDETIRPDTTVEALSKLKPAFNPKGGTVTAGTSSQITDGASSMLVMSAAKAAELGLTPIAKIRSMALAGVDPSIMGYGPVPATQKALANAGLSIEDIDVVELNEAFAAQALPVLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 3
Query:   45 VDKDEGLEKFDAA-KLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            VD+DE +        + KLRP+F + G+VTAGNAS ++DGAAA +L++  +A   G+Q +A+I  +A A   P+   T P  A  KA+  AG     I+  E NEAF   A A  K LG DP  VN +GG +++GHP+G SGAR
Sbjct:  214 VDQDEYIRHGATLDSIAKLRPAFDKEGTVTAGNASGLNDGAAAALLMTEAEAARRGIQPLARIVSWATAGVDPQIMGTGPIPASRKALEKAGWSVADIELVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 357          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   36 PIIVDKDEGLEKFDAAK-LMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            P + D DE       A+ L KLRP+F + GSVTAGNAS I+DGAA +V++   KA ELGL+ +A++  FA A   P    T P  A  K +  AG     +D  E NEAF   A++  + +G D  +VN +GG +++GHP+G SGAR
Sbjct:  212 PKVFDADEFPRHGTTAESLGKLRPAFSKDGSVTAGNASGINDGAAMVVVMKESKAKELGLKPMARLVAFASAGVDPAIMGTGPIPASTKCLEKAGWTPADLDLIEANEAFAAQAMSVNQDMGWDLSKVNVNGGAIAIGHPIGASGAR 358          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 64/146 (43.84%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   39 IIVDKDEGLEKFDAAKLM-KLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            I VD DE +        M KLRP+F + G+VTAGNAS ++DGAAA +L+S  +A   G+Q + +I  +A     P+   T P  A  KA+  AG +   +D  E NEAF   A A  K LG DP  VN +GG +++GHP+G SGAR
Sbjct:  211 ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   87 LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVA---IANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  L+P+F  +GG+VTAG +S I+DGA+ +V++SG +A++LG+Q +A IR  A A   P      P  +  KA+  AGL    ID+ E+NEAF   A   + + K+L    E+VN HGG ++LGHP GCSGAR
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMVVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGAR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   87 LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVA---IANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG +A++LG+Q +A IR  A A   P      P  +  KA+  AGL    ID+ E+NEAF   A   + + K+L    E+VN HGG ++LGHP GCSGAR
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGAR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   87 LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVA---IANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG +A++LG+Q +A IR  A A   P      P  +  KA+  AGL    ID+ E+NEAF   A   + + K+L    E+VN HGG ++LGHP GCSGAR
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGAR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   87 LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVA---IANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG +A++LG+Q +A IR  A A   P      P  +  KA+  AGL    ID+ E+NEAF   A   + + K+L    E+VN HGG ++LGHP GCSGAR
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGAR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   87 LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVA---IANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG +A++LG+Q +A IR  A A   P      P  +  KA+  AGL    ID+ E+NEAF   A   + + K+L    E+VN HGG ++LGHP GCSGAR
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGAR 355          
BLAST of GO241370 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 3
Query:   42 IVDKDEGLEKFDAAKLMK-LRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWXTTAPSLAILKAIANAGLEAXQIDYYEINEAFXVVAIANQKLLGXDPEQVNAHGGXVSLGHPLGCSGAR 473
            +VD DE +      + M+ +RP+F + G+VTAGNAS ++DGAAA+++++  +A   GL  +A+I  +A A   P+   T P  A  KA+  AG     +D  E NEAF   AIA  + +G DP  VN +GG +++GHP+G SG R
Sbjct:  211 VVDADEYIRHGATLEAMENVRPAFSKEGTVTAGNASGLNDGAAAVLVMTEDEAARRGLTPLARIASYATAGVDPQIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFAAQAIAVNRDMGWDPSIVNVNGGAIAIGHPIGASGCR 355          
The following BLAST results are available for this feature:
BLAST of GO241370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 273
Match NameE-valueIdentityDescription
FADA_SACD24.181e-2444.373-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
THIL_RHIME9.314e-2443.75Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
THIL_CHRVI1.216e-2343.54Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
THIL_ZOORA2.075e-2343.84Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
FADA_PSEOL3.539e-2345.113-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_PSEPU4.622e-2344.363-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK4.622e-2344.363-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP14.622e-2344.363-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEE44.622e-2344.363-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
THIL_PARDE6.037e-2340.69Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]

Pages

back to top
Properties
Property NameValue
Genbank description16 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 32 5, mRNA sequence.