GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQ+  G+V  CVAYP SDVT+ET K+E++
Sbjct:   32 GHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              + +D QI  G+V  C AYPTSDV +ET K+EE+
Sbjct:   84 GIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G DLPYSCRAG+CS+CA              F +DDQI  G+V  CVAYP S+VT+ET K+E +
Sbjct:   32 GHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +DDQ++  +V  CVAYPTSD  ++T ++E+++
Sbjct:   33 GIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKLY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GI+LPYSCRAG+CSTCA              F +DDQ+ AG++  CVAYPTSD  V+T  +++++
Sbjct:   34 GIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDLY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GI+LPYSCRAG+CSTCA              F +DDQ+ AG+V  C+AYP SD TV   +++E++
Sbjct:   35 GIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDELY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +D QI  G+V  CVAYPTSD T+ T ++E ++
Sbjct:   33 GIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGLY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLP+SCRAG+CSTCA              F +DDQI+ G+V  CVAYP SD  + T ++EE++
Sbjct:   34 GLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLP+SCRAG+CSTCA              F +DDQI+ G+V  CVAYP SD  + T ++EE++
Sbjct:   34 GLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLP+SCRAG+CSTCA              F +DDQI+ G+V  CVAYP SD  + T ++EE++
Sbjct:   33 GLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEELY 97          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER2_HYONI9.909e-1351.56Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_MAIZE9.909e-1353.13Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_SOLLS1.294e-1251.56Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_RHOPL1.294e-1247.69Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_BUMFI1.294e-1247.69Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_ODOSI1.690e-1247.69Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_GUITH1.690e-1250.77Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_THEVL2.208e-1247.69Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB2.208e-1247.69Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNLI2.208e-1247.69Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.