GE213492

Overview
NameGE213492
Unique NameGE213492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 316
            IE  K  +E+ CP  VSCADIL L+ RD VV  GG    +  GR DGR S+A   +  LP  +DS++   + FAA  ++   LV L+G H++G   C
Sbjct:  111 IEEAKARLEKACPRTVSCADILTLAARDAVVLTGGQRWEVPLGRLDGRISQAS--DVNLPGPSDSVAKQKQDFAAKTLNTLDLVTLVGGHTIGTAGC 205          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   38 KEAVER--ECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            KEA++    C   VSCADIL ++ RD V   GGP   ++ GR DG  S A  +   LP   D ++ +   FA  G+    ++AL G+H++G  HC K+ +R+Y
Sbjct:  110 KEALDAVPNCRNKVSCADILTMATRDVVNLAGGPQYDVELGRLDGLSSTAASVGGKLPHPTDDVNKLTSLFAKNGLSLNDMIALSGAHTLGFAHCTKVFNRIY 212          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK-SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I N++  V+++C  VVSC+DIL L+ RD VV  GGP   +  GRRD    +  E     LP    + S ++  FA   ++   LVAL G H++G  HC     RLY
Sbjct:  123 INNLRALVQKKCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFTDRLY 228          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYLP 346
            I+  K+ +E  CP  VSCADI+ ++ RD +   GGP   ++TGRRDG +S    ++   P    S++  ++ F +IG +   +VAL+ G H+VG  HC     R+  P
Sbjct:   99 IDEAKKELELVCPKTVSCADIVTIATRDSIALAGGPKFKVRTGRRDGLRSNPSDVKLLGP--TVSVATSIKAFKSIGFNVSTMVALIGGGHTVGVAHCSLFQDRIKDP 204          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGG--PYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I++IK AVE+EC  VVSCADI+ L+ RD V    G      + TGR DG+ S A +++  LP    +++    +F    +    +V LLG H++G THC  ++ RLY
Sbjct:  102 IDDIKSAVEKECDRVVSCADIIALATRDLVTLASGGKTRYEIPTGRLDGKISSALLVD--LPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLY 206          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAI-GIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I++IK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   +        LP  N S + +   F    G++   +VAL G+H++G+  C     R+Y
Sbjct:   96 IDSIKTQIEAICKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANENEANTDLPGFNSSRAELEAAFLKKGGLNTVDMVALSGAHTIGQAQCSTFRARIY 201          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGV-VALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 337
            I+ IK  +E+ CP  VSCADIL L+ RD V      P   + TGR DGR S A    + LP    + + + + FA   +D   LVAL G+H++G  HC     RL
Sbjct:  124 IDEIKYILEKRCPNTVSCADILTLAARDAVSYEFERPLWNVFTGRVDGRVSLATEAARDLPSAGANFTTLQKLFAESDLDVVDLVALSGAHTIGIAHCGVFGRRL 228          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG-LVALLGSHSVGRTHCVKLVHRLY 340
            I+ +K AVE  CP  VSCADIL ++ +  V   GGP   +  GRRD  ++   +    LP    ++  +   F  +G+D P  LVAL G H+ G+  C  ++ RLY
Sbjct:  109 IDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLY 214          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLVHRLY 340
            I+ +K AVE  CP  VSCAD+L ++ +  V   GGP   +  GRRD  ++  ++    LP    ++  + + F  +G++ +  LVAL G H+ G+  C  ++ RLY
Sbjct:  110 IDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 215          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA-EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+  K AVE+ CP  VSCADI+  + RD +   G     +  GRRDGR S A E ++  LP    +   + + F A  +    +V L G+H+VGR+ C     R++
Sbjct:  114 IDAAKTAVEQSCPRTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNATETVD--LPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFCASFFKRVW 217          
The following BLAST results are available for this feature:
BLAST of GE213492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PER69_ARATH8.006e-1342.27Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER50_ARATH8.006e-1337.86Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER12_ARATH1.366e-1238.68Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER8_ARATH1.784e-1236.11Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER60_ARATH1.784e-1239.25Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER1_HORVU3.042e-1237.74Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER24_ARATH3.973e-1240.00Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER32_ARATH5.190e-1236.79Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER1A_ARMRU1.972e-1133.96Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER1_MAIZE2.576e-1135.85Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description376 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.