GE213483

Overview
NameGE213483
Unique NameGE213483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y
Sbjct:   48 GVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQY 134          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = -1
Query:   22 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 276
            ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+L+S N+ EY
Sbjct:   85 YRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWS-NQEEY 168          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.829e-20
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = -1
Query:   22 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 276
            +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA ++S N+ EY
Sbjct:   79 YKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEY 162          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.829e-20
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y
Sbjct:   48 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 134          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.829e-20
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++ +Y
Sbjct:   48 GVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKY 134          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.829e-20
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = -1
Query:   22 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 276
            FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA L+  +  EY
Sbjct:   58 FKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F + + F  DYP KPP V F +++FHPNI ++G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y
Sbjct:   48 GVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKY 134          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F +++ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y
Sbjct:   48 GVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 134          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.569e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = -1
Query:   19 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK--REYL 279
            T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA ++++ K  ++YL
Sbjct:   80 TYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKKYL 168          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.382e-19
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            G F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y
Sbjct:   49 GVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKY 135          
The following BLAST results are available for this feature:
BLAST of GE213483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
UBC1_MAGGR6.760e-2048.28Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC19_ARATH6.760e-2055.29Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_SPISO8.829e-2052.94Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC4_SOLLC8.829e-2048.28Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC30_ARATH8.829e-2049.43Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_YEAST8.829e-2049.41Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC29_ARATH1.506e-1948.28Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC11_ARATH1.506e-1947.13Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBE2C_DROME2.569e-1948.31Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC5_YEAST4.382e-1947.13Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank description365 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.