GE213439

Overview
NameGE213439
Unique NameGE213439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.748e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -3
Query:    6 RPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSAATT 221
            R GRY  +F P+  V G+  AAN +A+G Y+ G+E+I+ VL+ +RK AE C  LQGF +  S GGGT +  T
Sbjct:   86 RVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFT 157          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = -3
Query:    6 RPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSAATT 221
            R G   +++ P+  + G+  AANN+A+G Y+ G E+ID V   ++K AE CD LQGF + HSLGGGT +  T
Sbjct:   90 RNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFT 161          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = -3
Query:    6 RPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSAATT 221
            R G++  +F P+  + G+  AANN+A+G Y+ G+E+ID VL+  RK AE C  LQGF +  S GGGT +  T
Sbjct:   86 RTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFT 157          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = -3
Query:   15 IFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 200
            +F P+  + G+  AANN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++GGGT +
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGS 62          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.444e-11
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = -3
Query:   15 GQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 173
            G+  AANN+A+GHYT G ELI+   D +RK A+ C+ LQGF V HS+GGGT +
Sbjct:    3 GKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGS 55          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.804e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = -3
Query:   15 IFRPDNFVFGQSG--AANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 200
            +F P+N    + G  A NNWA G YT+G  + + +LD++ +EAE CD L+GF +CHS+ GGT +
Sbjct:   85 LFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGS 147          
The following BLAST results are available for this feature:
BLAST of GE213439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
TBAL3_MOUSE4.748e-1347.22Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA4_DROME1.058e-1245.83Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBAL3_HUMAN1.381e-1245.83Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA2_ANEPH1.381e-1250.00Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_DICPU4.444e-1156.60Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBG_CHLRE5.804e-1145.31Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]

Pages

back to top
Properties
Property NameValue
Genbank description315 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.