GE213422

Overview
NameGE213422
Unique NameGE213422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKKS
Sbjct:   65 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.233e-26
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPKK+
Sbjct:   69 LEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.233e-26
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPKKS
Sbjct:   62 LEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.103e-26
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPKK+
Sbjct:   63 LEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.120e-26
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPNIN VLLPKKS
Sbjct:   65 LEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.044e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 195
            +  +AAEVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK+
Sbjct:   64 LEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.363e-25
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPKK+
Sbjct:   62 LEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 5.181e-25
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   53 LEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.181e-25
Identity = 52/66 (78.79%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPKK+
Sbjct:   62 LEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.181e-25
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK++
Sbjct:   64 LEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRT 129          
The following BLAST results are available for this feature:
BLAST of GE213422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A4_ARATH7.229e-2789.39Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_MAIZE1.233e-2687.88Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_SOLLC1.233e-2690.91Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_PETCR2.103e-2687.88Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A7_ARATH6.120e-2686.36Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A1_PEA1.044e-2587.69Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A3_WHEAT1.363e-2581.82Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A5_WHEAT5.181e-2583.33Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A2_WHEAT5.181e-2578.79Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A2_PEA5.181e-2584.85Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank description296 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.