GE213408

Overview
NameGE213408
Unique NameGE213408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of GE213408 vs. ExPASy Swiss-Prot
Match: TF2LX_MACMU (Homeobox protein TGIF2LX OS=Macaca mulatta GN=TGIF2LX PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  273 PERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVE 443
            P  SV +LR W+++H    YP +++K+ML+K+T L+ SQ+SNWFINAR R+   M++
Sbjct:   65 PAESVKILRDWMYKHRFRAYPSEAEKRMLSKKTNLSLSQISNWFINARRRILPDMLQ 121
The following BLAST results are available for this feature:
BLAST of GE213408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
TF2LX_MACMU8.037e-1147.37Homeobox protein TGIF2LX OS=Macaca mulatta GN=TGIF... [more]

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Properties
Property NameValue
Genbank description278 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.