GE213404

Overview
NameGE213404
Unique NameGE213404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.708e-40
Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L+IP   A +AL GV ME+ D AFPLL G+ A  D + A   V++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y
Sbjct:   28 GEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMY 195          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.843e-40
Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G D+P+ L +L+I PA +AL GV MEL D AFPLL GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QY
Sbjct:   32 GPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.843e-40
Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G D+P+ L +L+I PA +AL GV MEL D AFPLL GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QY
Sbjct:   32 GPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.260e-40
Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G+ QPVIL +LDIP + + L+GV MEL D AFPLL  ++ T D + A    +IA++VG  PR +GMERKD++  N  I++ Q  AL Q    + K+LVV NPANTN LI  + AP +  +N + + RLDHNRAL Q++ KLN  VS ++ +I+WGNHSS+Q+
Sbjct:   31 GSSQPVILQLLDIPESGKVLDGVLMELQDCAFPLLTDIIVTHDPMIAFDQADIAILVGARPRGKGMERKDLLQTNGEIFREQGRALNQVVKRDAKILVVGNPANTNTLITMKNAPDLSPENFSGMLRLDHNRALSQVAMKLNQPVSHIRKMIVWGNHSSTQF 192          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.079e-39
Identity = 86/168 (51.19%), Postives = 111/168 (66.07%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L+IP   A +AL GV MEL D AFPLL+ V A  D   A    ++A++VG  PR  GMERKD+++ N  I+ AQ  AL + A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+ ++ +I+WGNHS + Y
Sbjct:   28 GEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLQEVTAHADPKTAFKDADVALLVGARPRGPGMERKDLLTVNAQIFTAQGRALNEVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAGKSGKAVAGIEKLIVWGNHSPTMY 195          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.079e-39
Identity = 77/162 (47.53%), Postives = 111/162 (68.52%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G DQPVIL +LD+P A  A+ GV MEL D AFPLLK +   TD   A    + A +VG  PR +GMER+D++++N +I++ Q  AL + A+ + KVLVV NPANTNA IL+ FAP +P   I+ + RLDHNRA+  ++++ NV V  + ++++WGNHS + +
Sbjct:   32 GEDQPVILQLLDLPQAYGAVQGVVMELQDCAFPLLKEIQVATDPHAAFLNADYAFLVGSKPRTKGMERRDLLAENAAIFRTQGRALNEAASRDVKVLVVGNPANTNASILRRFAPDLPDDAISAMIRLDHNRAVSMLAQRCNVDVDSIADMVVWGNHSPTMF 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.409e-39
Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A   V+IA++VG  PR  GMERKD++  N  I+ AQ  AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + Y
Sbjct:   27 GEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMY 194          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.409e-39
Identity = 85/168 (50.60%), Postives = 110/168 (65.48%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L+IP   A +AL GV ME+ D AFPLL G+ A +D + A   V++A++VG  PR  GMER D++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y
Sbjct:   28 GEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMQAHSDPMTAFKDVDVALLVGARPRGPGMERADLLSANAQIFTAQGRALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMY 195          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.409e-39
Identity = 84/168 (50.00%), Postives = 109/168 (64.88%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L+IP   A  AL GV MEL D AFPLL G+ A +D ++A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D++ + +WGNHS + Y
Sbjct:   28 GEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPLQAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKAGFKVGDIRKLTVWGNHSPTMY 195          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.840e-39
Identity = 86/168 (51.19%), Postives = 109/168 (64.88%), Query Frame = -2
Query:   24 GRGRGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 521
            G   G DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A   V++A++VG  PR  GMERKD++  N  I+ AQ  AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + Y
Sbjct:   27 GEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDVALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMY 194          
The following BLAST results are available for this feature:
BLAST of GE213404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_RALSO3.708e-4051.19Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_MYCUA4.843e-4051.23Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM4.843e-4051.23Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_NITEU8.260e-4049.38Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_BORA11.079e-3951.19Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH2_BURTA1.079e-3947.53Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_XANC51.409e-3951.79Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_RALPJ1.409e-3950.60Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH_DELAS1.409e-3950.00Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_XANAC1.840e-3951.19Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]

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Properties
Property NameValue
Genbank description274 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.