GE213388

Overview
NameGE213388
Unique NameGE213388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.301e-17
Identity = 32/43 (74.42%), Postives = 40/43 (93.02%), Query Frame = -3
Query:   20 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 148
            CPRC S +TKFCYYNNY+++QPR+FCK+C+RYWT GGT+RNVP
Sbjct:   50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVP 92          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = -3
Query:   20 AARAGTSQEKTLKKP-DKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 208
            AA A     + L+ P D    CPRC S  TKFCYYNNY+++QPR+FCK C+RYWT GGT+RN+P
Sbjct:   54 AAAALMDGGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIP 117          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.181e-16
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = -3
Query:   20 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 169
            +P +   CPRCNS +TKFCYYNNY++ QPR+ CK+C+RYWT GG++RNVP
Sbjct:   63 RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVP 112          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = -3
Query:   20 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 148
            CPRC S +TKFCYYNNY++ QPR+FCK C+RYWT GG++RNVP
Sbjct:   27 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVP 69          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.436e-16
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = -3
Query:   20 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 148
            CPRC S +TKFCYYNNY+++QPR+FCK C+RYWT GG++RN+P
Sbjct:   40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIP 82          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF43_ARATH (Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.799e-15
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = -3
Query:   20 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 148
            C RC+S +TKFCYYNNY+  QPR+FCKNC+RYWT GG +RNVP
Sbjct:   27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVP 69          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF45_ARATH (Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.444e-14
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = -3
Query:   20 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 148
            C RC+S +TKFCYYNNY   QPR+FCKNC+RYWT GG +RN+P
Sbjct:   27 CARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIP 69          
The following BLAST results are available for this feature:
BLAST of GE213388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DOF21_ARATH5.301e-1774.42Dof zinc finger protein DOF2.1 OS=Arabidopsis thal... [more]
DOF56_ARATH6.923e-1757.81Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF41_ARATH1.181e-1664.00Dof zinc finger protein DOF4.1 OS=Arabidopsis thal... [more]
DOF35_ARATH2.014e-1672.09Dof zinc finger protein DOF3.5 OS=Arabidopsis thal... [more]
DOF12_ARATH3.436e-1669.77Dof zinc finger protein DOF1.2 OS=Arabidopsis thal... [more]
DOF43_ARATH3.799e-1572.09Dof zinc finger protein DOF4.3 OS=Arabidopsis thal... [more]
DOF45_ARATH1.444e-1469.77Dof zinc finger protein DOF4.5 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank description257 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.