GE213373

Overview
NameGE213373
Unique NameGE213373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  391 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            M++F EAP G+   GEKIFKTKCAQCH  EKG GHKQGPNL GLFGR SGT  G+
Sbjct:    1 MSTFAEAPAGDLARGEKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAGF 55          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ++F +APPG+   G KIFK KCA+CHTV+ GAGHKQGPNLNG FGR SGT  G+
Sbjct:    1 STFABAPPGBPAKGAKIFKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAGF 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_EMENI (Cytochrome c OS=Emericella nidulans GN=cycA PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  403 DEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            D   PG++  G K+F+T+C QCHTVE G GHK GPNL+GLFGR++G   GY
Sbjct:    6 DSYSPGDSTKGAKLFETRCKQCHTVENGGGHKVGPNLHGLFGRKTGQAEGY 56          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+
Sbjct:    2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNG+FGR++G  PG+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+
Sbjct:    2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_HIPAM (Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G +PG+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_PONAB (Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGY
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGY 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGF 47          
The following BLAST results are available for this feature:
BLAST of GE213373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CYC_CHLRE3.147e-1770.91Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_ENTIN1.196e-1666.67Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC_EMENI8.022e-1358.82Cytochrome c OS=Emericella nidulans GN=cycA PE=2 S... [more]
CYC2_MOUSE8.022e-1369.57Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_MACGI1.048e-1265.22Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC2_RAT1.048e-1269.57Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_HIPAM1.787e-1265.22Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=... [more]
CYC_SHEEP2.334e-1265.22Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PONAB2.334e-1265.22Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3[more]
CYC_PIG2.334e-1265.22Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank description241 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.