GE213373

Overview
NameGE213373
Unique NameGE213373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+A+ G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDAEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_RAT (Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_MOUSE (Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G A+ G+KIF  KC QCHTVE G  HK GPNL+GLFGR+ G  PG+
Sbjct:    1 GZAZKGKKIFTQKCLQCHTVEAGGKHKTGPNLSGLFGRKQGQAPGF 46          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_RABIT (Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_LAMGU (Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_ESCGI (Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNGL GR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGLIGRKTGQAEGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_CAMDR (Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGF 47          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_LAMTR (Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  418 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            G+ + G+K+F  KC+QCHTVEK   HK GPNL+GLFGR++G  PG+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGF 47          
The following BLAST results are available for this feature:
BLAST of GE213373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CYC2_XENTR1.513e-1163.04Cytochrome c, testis-specific OS=Xenopus tropicali... [more]
CYC_RAT1.976e-1163.04Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs... [more]
CYC_MOUSE1.976e-1163.04Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1... [more]
CYC_HELAS1.976e-1163.04Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_RABIT2.581e-1163.04Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1... [more]
CYC_LAMGU2.581e-1163.04Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2[more]
CYC_ESCGI2.581e-1163.04Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1... [more]
CYC_CHESE2.581e-1163.04Cytochrome c OS=Chelydra serpentina PE=1 SV=2[more]
CYC_CAMDR2.581e-1163.04Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 S... [more]
CYC_LAMTR3.370e-1158.70Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV... [more]

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Properties
Property NameValue
Genbank description241 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.