GE213370

Overview
NameGE213370
Unique NameGE213370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -1
Query:   22 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY 309
            +SPY  NGGT +A+AG D+ ++A+DTR+S GYSI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILY 122          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_TRYBB (Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.854e-16
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = -1
Query:   13 KQHPA-WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTR-DYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQH-NKQMSCPGMAQLLSNTLYLGR 324
            K HP  WSPY +NGGT  AIAG++Y V+ ADTR++  + I TR D SK+ KL D+  +ASSG QAD   LQ++L  R   YQ+ +  K  S   +A+L S  LY  R
Sbjct:   39 KGHPQHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRR 145          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_CAEEL (Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:   13 WSPYDNNGGTCVAIAGADYCVIAADTRMSTG-YSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 309
            W+PY   GG+  AI+G ++ ++A+DTRM+    +ILTRD  KI  L D  ++ +SGF  DV  L+K+L +R   Y+  +   MS    A+LLS  LY  R
Sbjct:   44 WNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRR 143          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = -1
Query:   22 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY 309
            + PY  NGGT VAIAG  + ++A DTR   GY+I TR   ++ ++ D  V+ +SGF+AD  AL K +  R  +Y   H ++MS    A ++   LY
Sbjct:    6 FDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLY 101          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -1
Query:   22 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLY 309
            ++PY +NGGT + IAG D+ V+A DTR  T YSI +R   K+    D  VM+++GF AD  AL K        Y   HN K++S    A+ + + LY
Sbjct:   21 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLY 117          
The following BLAST results are available for this feature:
BLAST of GE213370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSB1A_CARAU8.024e-1946.88Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_TRYBB2.854e-1647.66Proteasome subunit beta type-1 OS=Trypanosoma bruc... [more]
PSB1_CAEEL5.951e-1441.00Proteasome subunit beta type-1 OS=Caenorhabditis e... [more]
PSB1_SCHPO1.015e-1339.58Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSB1_YEAST1.621e-1140.21Proteasome component C5 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank description238 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.