GE213359

Overview
NameGE213359
Unique NameGE213359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:962..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.244e-22
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY G+GWV+W+ +  LP+EL+F + YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +++TG F+I +    +P
Sbjct:  275 KYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLP 372
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.790e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEIL---SKDVGVPA 316
            ++GL   G GWV+WR +  LP ELVF++DYLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L   + K G +E +     D G+PA
Sbjct:  276 KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA 377
[Close]
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.346e-18
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 2 
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVG 307
            ++GL   GVGWVVWR K DL  +LVF+++YLG +  TF+LNFS+   QIIAQYY F+R G  GY  I + C      +   L+K G F+++    G
Sbjct:  272 KFGLSPLGVGWVVWREKKDLHKDLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTG 367
The following BLAST results are available for this feature:
BLAST of GE213359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISIN7.244e-2244.90Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_SHIFL9.790e-1944.12Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI9.790e-1944.12Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL69.790e-1944.12Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO579.790e-1944.12Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL9.790e-1944.12Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI9.790e-1944.12Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL69.790e-1944.12Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO579.790e-1944.12Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADB_DICDI6.346e-1845.83Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank description225 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.